Gene : Potri.016G040200 P. trichocarpa v3.1
Defline:  (1 of 3) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) Genomic Order:  415
Name:  ? Potri.016G040200 Secondary Identifier:  ? PAC:37250735
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CAROTENOID-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-5943 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5947 Populus trichocarpa pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.016G040200 0.5kb upstream 0.5kb upstream 6125 true Chr16: 2461144-2467268 Populus trichocarpa
Potri.016G040200 0.5kb upstream 0.5kb upstream 500 false Chr16: 2466769-2467268 Populus trichocarpa
Potri.016G040200 0.5kb downstream 0.5kb downstream 6125 true Chr16: 2460644-2466768 Populus trichocarpa
Potri.016G040200 0.5kb downstream 0.5kb downstream 500 false Chr16: 2460644-2461143 Populus trichocarpa
Potri.016G040200 1.0kb upstream 1.0kb upstream 6625 true Chr16: 2461144-2467768 Populus trichocarpa
Potri.016G040200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2466769-2467768 Populus trichocarpa
Potri.016G040200 1.0kb downstream 1.0kb downstream 6625 true Chr16: 2460144-2466768 Populus trichocarpa
Potri.016G040200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2460144-2461143 Populus trichocarpa
Potri.016G040200 2.0kb upstream 2.0kb upstream 7625 true Chr16: 2461144-2468768 Populus trichocarpa
Potri.016G040200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2466769-2468768 Populus trichocarpa
Potri.016G040200 2.0kb downstream 2.0kb downstream 7625 true Chr16: 2459144-2466768 Populus trichocarpa
Potri.016G040200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2459144-2461143 Populus trichocarpa
Potri.016G040200 5.0kb upstream 5.0kb upstream 10625 true Chr16: 2461144-2471768 Populus trichocarpa
Potri.016G040200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2466769-2471768 Populus trichocarpa
Potri.016G040200 5.0kb downstream 5.0kb downstream 10625 true Chr16: 2456144-2466768 Populus trichocarpa
Potri.016G040200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2456144-2461143 Populus trichocarpa
Potri.016G040200 10.0kb upstream 10.0kb upstream 15625 true Chr16: 2461144-2476768 Populus trichocarpa
Potri.016G040200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2466769-2476768 Populus trichocarpa
Potri.016G040200 10.0kb downstream 10.0kb downstream 15625 true Chr16: 2451144-2466768 Populus trichocarpa
Potri.016G040200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2451144-2461143 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122449867 5262 Malpighiales View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain