Gene : Potri.T005800 P. trichocarpa v3.1
Defline:  (1 of 3) K01601 - ribulose-bisphosphate carboxylase large chain (rbcL) Genomic Order:  3
Name:  ? Potri.T005800 Secondary Identifier:  ? PAC:37241744
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CALVIN-PWY Populus trichocarpa pathologic  
Ptrichocarpa PHOTOALL-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-5723 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.T005800 0.5kb upstream 0.5kb upstream 1412 true scaffold_21: 436939-438350 Populus trichocarpa
Potri.T005800 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 436939-437438 Populus trichocarpa
Potri.T005800 0.5kb downstream 0.5kb downstream 1412 true scaffold_21: 437439-438850 Populus trichocarpa
Potri.T005800 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 438351-438850 Populus trichocarpa
Potri.T005800 1.0kb upstream 1.0kb upstream 1912 true scaffold_21: 436439-438350 Populus trichocarpa
Potri.T005800 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 436439-437438 Populus trichocarpa
Potri.T005800 1.0kb downstream 1.0kb downstream 1912 true scaffold_21: 437439-439350 Populus trichocarpa
Potri.T005800 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 438351-439350 Populus trichocarpa
Potri.T005800 2.0kb upstream 2.0kb upstream 2912 true scaffold_21: 435439-438350 Populus trichocarpa
Potri.T005800 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 435439-437438 Populus trichocarpa
Potri.T005800 2.0kb downstream 2.0kb downstream 2912 true scaffold_21: 437439-440350 Populus trichocarpa
Potri.T005800 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 438351-440350 Populus trichocarpa
Potri.T005800 5.0kb upstream 5.0kb upstream 5912 true scaffold_21: 432439-438350 Populus trichocarpa
Potri.T005800 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 432439-437438 Populus trichocarpa
Potri.T005800 5.0kb downstream 5.0kb downstream 5912 true scaffold_21: 437439-443350 Populus trichocarpa
Potri.T005800 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 438351-443350 Populus trichocarpa
Potri.T005800 10.0kb upstream 10.0kb upstream 10912 true scaffold_21: 427439-438350 Populus trichocarpa
Potri.T005800 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 427439-437438 Populus trichocarpa
Potri.T005800 10.0kb downstream 10.0kb downstream 10912 true scaffold_21: 437439-448350 Populus trichocarpa
Potri.T005800 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 438351-448350 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122397917 5262 Malpighiales Singleton cluster - no MSA
124254303 5268 Malvidae View MSA
124050800 5270 Rosid View MSA
123751247 5271 Pentapetalae View MSA
122773961 5272 Eudicot View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain