Gene : Podel.06G043900 P. deltoides WV94 v2.1
Defline:  (1 of 5) 5.5.1.19 - Lycopene beta-cyclase Genomic Order:  439
Name:  ? Podel.06G043900 Secondary Identifier:  ? PAC:37326330
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
PdeltoidesWV94 CAROTENOID-PWY Populus deltoides WV94 pathologic  
PdeltoidesWV94 PWY-5943 Populus deltoides WV94 pathologic  
PdeltoidesWV94 PWY-5947 Populus deltoides WV94 pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Podel.06G043900 0.5kb upstream 0.5kb upstream 2476 true Chr06: 3148846-3151321 Populus deltoides WV94
Podel.06G043900 0.5kb upstream 0.5kb upstream 500 false Chr06: 3150822-3151321 Populus deltoides WV94
Podel.06G043900 0.5kb downstream 0.5kb downstream 2476 true Chr06: 3148346-3150821 Populus deltoides WV94
Podel.06G043900 0.5kb downstream 0.5kb downstream 500 false Chr06: 3148346-3148845 Populus deltoides WV94
Podel.06G043900 1.0kb upstream 1.0kb upstream 2976 true Chr06: 3148846-3151821 Populus deltoides WV94
Podel.06G043900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 3150822-3151821 Populus deltoides WV94
Podel.06G043900 1.0kb downstream 1.0kb downstream 2976 true Chr06: 3147846-3150821 Populus deltoides WV94
Podel.06G043900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 3147846-3148845 Populus deltoides WV94
Podel.06G043900 2.0kb upstream 2.0kb upstream 3976 true Chr06: 3148846-3152821 Populus deltoides WV94
Podel.06G043900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 3150822-3152821 Populus deltoides WV94
Podel.06G043900 2.0kb downstream 2.0kb downstream 3976 true Chr06: 3146846-3150821 Populus deltoides WV94
Podel.06G043900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 3146846-3148845 Populus deltoides WV94
Podel.06G043900 5.0kb upstream 5.0kb upstream 6976 true Chr06: 3148846-3155821 Populus deltoides WV94
Podel.06G043900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 3150822-3155821 Populus deltoides WV94
Podel.06G043900 5.0kb downstream 5.0kb downstream 6976 true Chr06: 3143846-3150821 Populus deltoides WV94
Podel.06G043900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 3143846-3148845 Populus deltoides WV94
Podel.06G043900 10.0kb upstream 10.0kb upstream 11976 true Chr06: 3148846-3160821 Populus deltoides WV94
Podel.06G043900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 3150822-3160821 Populus deltoides WV94
Podel.06G043900 10.0kb downstream 10.0kb downstream 11976 true Chr06: 3138846-3150821 Populus deltoides WV94
Podel.06G043900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 3138846-3148845 Populus deltoides WV94

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122449867 5262 Malpighiales View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier