Gene : Podel.T025600 P. deltoides WV94 v2.1
Defline:  (1 of 2) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  5
Name:  ? Podel.T025600 Secondary Identifier:  ? PAC:37331365
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
PdeltoidesWV94 PWY-5120 Populus deltoides WV94 pathologic  
PdeltoidesWV94 PWY-5910 Populus deltoides WV94 pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Podel.T025600 0.5kb upstream 0.5kb upstream 2764 true scaffold_124: 28482-31245 Populus deltoides WV94
Podel.T025600 0.5kb upstream 0.5kb upstream 500 false scaffold_124: 30746-31245 Populus deltoides WV94
Podel.T025600 0.5kb downstream 0.5kb downstream 2764 true scaffold_124: 27982-30745 Populus deltoides WV94
Podel.T025600 0.5kb downstream 0.5kb downstream 500 false scaffold_124: 27982-28481 Populus deltoides WV94
Podel.T025600 1.0kb upstream 1.0kb upstream 3264 true scaffold_124: 28482-31745 Populus deltoides WV94
Podel.T025600 1.0kb upstream 1.0kb upstream 1000 false scaffold_124: 30746-31745 Populus deltoides WV94
Podel.T025600 1.0kb downstream 1.0kb downstream 3264 true scaffold_124: 27482-30745 Populus deltoides WV94
Podel.T025600 1.0kb downstream 1.0kb downstream 1000 false scaffold_124: 27482-28481 Populus deltoides WV94
Podel.T025600 2.0kb upstream 2.0kb upstream 4264 true scaffold_124: 28482-32745 Populus deltoides WV94
Podel.T025600 2.0kb upstream 2.0kb upstream 2000 false scaffold_124: 30746-32745 Populus deltoides WV94
Podel.T025600 2.0kb downstream 2.0kb downstream 4264 true scaffold_124: 26482-30745 Populus deltoides WV94
Podel.T025600 2.0kb downstream 2.0kb downstream 2000 false scaffold_124: 26482-28481 Populus deltoides WV94
Podel.T025600 5.0kb upstream 5.0kb upstream 7264 true scaffold_124: 28482-35745 Populus deltoides WV94
Podel.T025600 5.0kb upstream 5.0kb upstream 5000 false scaffold_124: 30746-35745 Populus deltoides WV94
Podel.T025600 5.0kb downstream 5.0kb downstream 7264 true scaffold_124: 23482-30745 Populus deltoides WV94
Podel.T025600 5.0kb downstream 5.0kb downstream 5000 false scaffold_124: 23482-28481 Populus deltoides WV94
Podel.T025600 10.0kb upstream 10.0kb upstream 12264 true scaffold_124: 28482-40745 Populus deltoides WV94
Podel.T025600 10.0kb upstream 10.0kb upstream 10000 false scaffold_124: 30746-40745 Populus deltoides WV94
Podel.T025600 10.0kb downstream 10.0kb downstream 12264 true scaffold_124: 18482-30745 Populus deltoides WV94
Podel.T025600 10.0kb downstream 10.0kb downstream 10000 false scaffold_124: 18482-28481 Populus deltoides WV94

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122456389 5262 Malpighiales View MSA
124238583 5268 Malvidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier