Protein Domain : IPR012156

Type:  Family Name:  Cold shock, CspA
Description:  Temperature downshift produces a number of changes in cellular physiology including decreased membrane fluidity, reduced mRNA transcription and translation due to the stabilisation of secondary structures, inefficient folding of some proteins, and reduced enzyme activity []. In response to this, bacteria produce a set of proteins, known as the cold-shock proteins (CSPs), to counteract these harmful effects.This entry represents a family of small CSPs consisting of CspA, one of the first cold-shock proteins identified, and its homologues. Note that while some members of this family are induced during cold-shock, some are either constitutively expressed or induced by other stresses such as nutrient starvation. While information about the physiological functions of the CSPs is limited, their structural properties have been well studied [, , , ]. These proteins have a five-stranded beta-barrel structural fold and are part of the wider oligonucleotide/oligosaccharide-binding (OB family). They preferentially bind pyrimidine-rich regions of single-stranded RNA and DNA with high affinity, but not double-stranded RNA or DNA. Thus it is postulated that CSPs may act as RNA chaperones by destabilising RNA secondary structures. Experimental evidence suggests that they bind mRNA and regulate ribosomal translation, rate of mRNA dergadation and termination of transcription; functions that are important during normal growth as well as cold shock. Short Name:  Cold_shock_CspA

0 Child Features

3 Contains

DB identifier Type Name
IPR012340 Domain Nucleic acid-binding, OB-fold
IPR002059 Domain Cold-shock protein, DNA-binding
IPR019844 Conserved_site Cold-shock conserved site

1 Cross References

Identifier
PIRSF002599

0 Found In

1 GO Annotation

GO Term Gene Name
GO:0003676 IPR012156

1 Ontology Annotations

GO Term Gene Name
GO:0003676 IPR012156

0 Parent Features

26 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
9256 A4SA53 PAC:27412890 Ostreococcus lucimarinus 76  
Araha.11756s0178.1.p PAC:28856379 Arabidopsis halleri 60  
Spipo1G0065200 PAC:31521234 Spirodela polyrhiza 88  
Traes_2DS_1FBA5F748.1 PAC:31825516 Triticum aestivum 69  
Brdisv1pangenome1006674m.p PAC:33624800 Brachypodium distachyon Pangenome 73  
Brdisv1pangenome1010843m.p PAC:33656855 Brachypodium distachyon Pangenome 73  
Brdisv1pangenome1010437m.p PAC:33658052 Brachypodium distachyon Pangenome 73  
Brdisv1BdTR11A1048438m.p PAC:35690200 Brachypodium distachyon BdTR11a 73  
Brdisv1BdTR11A1048943m.p PAC:35687783 Brachypodium distachyon BdTR11a 73  
Brdisv1BdTR11A1044577m.p PAC:35691446 Brachypodium distachyon BdTR11a 70  
Brdisv1BdTR11A1043582m.p PAC:35696980 Brachypodium distachyon BdTR11a 81  
Brdisv1BdTR11A1042596m.p PAC:35693733 Brachypodium distachyon BdTR11a 70  
Brdisv1BdTR11A1040297m.p PAC:35690879 Brachypodium distachyon BdTR11a 70  
Brdisv1BdTR11A1041472m.p PAC:35690603 Brachypodium distachyon BdTR11a 73  
Phvul.007G028900.1.p PAC:37165067 Phaseolus vulgaris 66  
HORVU2Hr1G025670.1 PAC:38369571 Hordeum vulgare 68  
HORVU2Hr1G025660.1 PAC:38362725 Hordeum vulgare 85  
HORVU2Hr1G025670.2 PAC:38369572 Hordeum vulgare 81  
HORVU2Hr1G025680.1 PAC:38360261 Hordeum vulgare 68  
HORVU4Hr1G032590.2 PAC:38582917 Hordeum vulgare 80  
HORVU4Hr1G032590.1 PAC:38582918 Hordeum vulgare 80  
Thint.09G0071000.1.p PAC:40820046 Thinopyrum intermedium 78  
Thint.09G0071100.1.p PAC:40823219 Thinopyrum intermedium 70  
Thint.04G0146000.1.p PAC:40764408 Thinopyrum intermedium 81  
Thint.06G0137400.1.p PAC:40786443 Thinopyrum intermedium 68  
Thint.06G0137300.1.p PAC:40782970 Thinopyrum intermedium 78  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10736231
            11322871
            8321289
            9692981
            12530521