Gene : Thecc1EG000025 T. cacao v1.1
Defline:  (1 of 3) 1.1.1.34 - Hydroxymethylglutaryl-CoA reductase (NADPH) / HMG-CoA reductase Genomic Order:  20
Name:  ? Thecc1EG000025 Secondary Identifier:  ? PAC:27436774
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5910 Theobroma cacao pathologic  
Tcacao PWY-922 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000025 0.5kb upstream 0.5kb upstream 3865 true scaffold_1: 103497-107361 Theobroma cacao
Thecc1EG000025 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 106862-107361 Theobroma cacao
Thecc1EG000025 0.5kb downstream 0.5kb downstream 3865 true scaffold_1: 102997-106861 Theobroma cacao
Thecc1EG000025 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 102997-103496 Theobroma cacao
Thecc1EG000025 1.0kb upstream 1.0kb upstream 4365 true scaffold_1: 103497-107861 Theobroma cacao
Thecc1EG000025 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 106862-107861 Theobroma cacao
Thecc1EG000025 1.0kb downstream 1.0kb downstream 4365 true scaffold_1: 102497-106861 Theobroma cacao
Thecc1EG000025 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 102497-103496 Theobroma cacao
Thecc1EG000025 2.0kb upstream 2.0kb upstream 5365 true scaffold_1: 103497-108861 Theobroma cacao
Thecc1EG000025 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 106862-108861 Theobroma cacao
Thecc1EG000025 2.0kb downstream 2.0kb downstream 5365 true scaffold_1: 101497-106861 Theobroma cacao
Thecc1EG000025 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 101497-103496 Theobroma cacao
Thecc1EG000025 5.0kb upstream 5.0kb upstream 8365 true scaffold_1: 103497-111861 Theobroma cacao
Thecc1EG000025 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 106862-111861 Theobroma cacao
Thecc1EG000025 5.0kb downstream 5.0kb downstream 8365 true scaffold_1: 98497-106861 Theobroma cacao
Thecc1EG000025 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 98497-103496 Theobroma cacao
Thecc1EG000025 10.0kb upstream 10.0kb upstream 13365 true scaffold_1: 103497-116861 Theobroma cacao
Thecc1EG000025 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 106862-116861 Theobroma cacao
Thecc1EG000025 10.0kb downstream 10.0kb downstream 13365 true scaffold_1: 93497-106861 Theobroma cacao
Thecc1EG000025 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 93497-103496 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123815294 5264 Brassicales-Malvales Singleton cluster - no MSA
124311729 5266 SBM Singleton cluster - no MSA
124160968 5268 Malvidae Singleton cluster - no MSA
123884970 5270 Rosid Singleton cluster - no MSA
123751436 5271 Pentapetalae View MSA
122791870 5272 Eudicot View MSA
122051392 5273 Angiosperm View MSA
121350752 5274 Embryophyte View MSA
123381875 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain