Gene : Thecc1EG046387 T. cacao v1.1
Defline:  (1 of 1) K05582 - NAD(P)H-quinone oxidoreductase subunit K (ndhK) Genomic Order:  16
Name:  ? Thecc1EG046387 Secondary Identifier:  ? PAC:27459549
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3781 Theobroma cacao pathologic  
Tcacao PWY-4302 Theobroma cacao pathologic  
Tcacao PWY-5083 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046387 0.5kb upstream 0.5kb upstream 3115 true cacao1chloroplast: 50887-54001 Theobroma cacao
Thecc1EG046387 0.5kb upstream 0.5kb upstream 500 false cacao1chloroplast: 53502-54001 Theobroma cacao
Thecc1EG046387 0.5kb downstream 0.5kb downstream 3115 true cacao1chloroplast: 50387-53501 Theobroma cacao
Thecc1EG046387 0.5kb downstream 0.5kb downstream 500 false cacao1chloroplast: 50387-50886 Theobroma cacao
Thecc1EG046387 1.0kb upstream 1.0kb upstream 3615 true cacao1chloroplast: 50887-54501 Theobroma cacao
Thecc1EG046387 1.0kb upstream 1.0kb upstream 1000 false cacao1chloroplast: 53502-54501 Theobroma cacao
Thecc1EG046387 1.0kb downstream 1.0kb downstream 3615 true cacao1chloroplast: 49887-53501 Theobroma cacao
Thecc1EG046387 1.0kb downstream 1.0kb downstream 1000 false cacao1chloroplast: 49887-50886 Theobroma cacao
Thecc1EG046387 2.0kb upstream 2.0kb upstream 4615 true cacao1chloroplast: 50887-55501 Theobroma cacao
Thecc1EG046387 2.0kb upstream 2.0kb upstream 2000 false cacao1chloroplast: 53502-55501 Theobroma cacao
Thecc1EG046387 2.0kb downstream 2.0kb downstream 4615 true cacao1chloroplast: 48887-53501 Theobroma cacao
Thecc1EG046387 2.0kb downstream 2.0kb downstream 2000 false cacao1chloroplast: 48887-50886 Theobroma cacao
Thecc1EG046387 5.0kb upstream 5.0kb upstream 7615 true cacao1chloroplast: 50887-58501 Theobroma cacao
Thecc1EG046387 5.0kb upstream 5.0kb upstream 5000 false cacao1chloroplast: 53502-58501 Theobroma cacao
Thecc1EG046387 5.0kb downstream 5.0kb downstream 7615 true cacao1chloroplast: 45887-53501 Theobroma cacao
Thecc1EG046387 5.0kb downstream 5.0kb downstream 5000 false cacao1chloroplast: 45887-50886 Theobroma cacao
Thecc1EG046387 10.0kb upstream 10.0kb upstream 12615 true cacao1chloroplast: 50887-63501 Theobroma cacao
Thecc1EG046387 10.0kb upstream 10.0kb upstream 10000 false cacao1chloroplast: 53502-63501 Theobroma cacao
Thecc1EG046387 10.0kb downstream 10.0kb downstream 12615 true cacao1chloroplast: 40887-53501 Theobroma cacao
Thecc1EG046387 10.0kb downstream 10.0kb downstream 10000 false cacao1chloroplast: 40887-50886 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123815163 5264 Brassicales-Malvales Singleton cluster - no MSA
124311602 5266 SBM Singleton cluster - no MSA
124160854 5268 Malvidae Singleton cluster - no MSA
124038156 5270 Rosid View MSA
123753609 5271 Pentapetalae View MSA
122797515 5272 Eudicot View MSA
122050391 5273 Angiosperm View MSA
121349421 5274 Embryophyte View MSA
123381301 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain