Gene : Thecc1EG046389 T. cacao v1.1
Defline:  (1 of 1) K01601 - ribulose-bisphosphate carboxylase large chain (rbcL) Genomic Order:  18
Name:  ? Thecc1EG046389 Secondary Identifier:  ? PAC:27459566
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CALVIN-PWY Theobroma cacao pathologic  
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-5723 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046389 0.5kb upstream 0.5kb upstream 2625 true cacao1chloroplast: 58086-60710 Theobroma cacao
Thecc1EG046389 0.5kb upstream 0.5kb upstream 500 false cacao1chloroplast: 58086-58585 Theobroma cacao
Thecc1EG046389 0.5kb downstream 0.5kb downstream 2625 true cacao1chloroplast: 58586-61210 Theobroma cacao
Thecc1EG046389 0.5kb downstream 0.5kb downstream 500 false cacao1chloroplast: 60711-61210 Theobroma cacao
Thecc1EG046389 1.0kb upstream 1.0kb upstream 3125 true cacao1chloroplast: 57586-60710 Theobroma cacao
Thecc1EG046389 1.0kb upstream 1.0kb upstream 1000 false cacao1chloroplast: 57586-58585 Theobroma cacao
Thecc1EG046389 1.0kb downstream 1.0kb downstream 3125 true cacao1chloroplast: 58586-61710 Theobroma cacao
Thecc1EG046389 1.0kb downstream 1.0kb downstream 1000 false cacao1chloroplast: 60711-61710 Theobroma cacao
Thecc1EG046389 2.0kb upstream 2.0kb upstream 4125 true cacao1chloroplast: 56586-60710 Theobroma cacao
Thecc1EG046389 2.0kb upstream 2.0kb upstream 2000 false cacao1chloroplast: 56586-58585 Theobroma cacao
Thecc1EG046389 2.0kb downstream 2.0kb downstream 4125 true cacao1chloroplast: 58586-62710 Theobroma cacao
Thecc1EG046389 2.0kb downstream 2.0kb downstream 2000 false cacao1chloroplast: 60711-62710 Theobroma cacao
Thecc1EG046389 5.0kb upstream 5.0kb upstream 7125 true cacao1chloroplast: 53586-60710 Theobroma cacao
Thecc1EG046389 5.0kb upstream 5.0kb upstream 5000 false cacao1chloroplast: 53586-58585 Theobroma cacao
Thecc1EG046389 5.0kb downstream 5.0kb downstream 7125 true cacao1chloroplast: 58586-65710 Theobroma cacao
Thecc1EG046389 5.0kb downstream 5.0kb downstream 5000 false cacao1chloroplast: 60711-65710 Theobroma cacao
Thecc1EG046389 10.0kb upstream 10.0kb upstream 12125 true cacao1chloroplast: 48586-60710 Theobroma cacao
Thecc1EG046389 10.0kb upstream 10.0kb upstream 10000 false cacao1chloroplast: 48586-58585 Theobroma cacao
Thecc1EG046389 10.0kb downstream 10.0kb downstream 12125 true cacao1chloroplast: 58586-70710 Theobroma cacao
Thecc1EG046389 10.0kb downstream 10.0kb downstream 10000 false cacao1chloroplast: 60711-70710 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832933 5264 Brassicales-Malvales View MSA
124321833 5266 SBM View MSA
124244813 5268 Malvidae View MSA
124038153 5270 Rosid View MSA
123753610 5271 Pentapetalae View MSA
122775167 5272 Eudicot View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain