Gene : Thecc1EG046383 T. cacao v1.1
Defline:  (1 of 1) K02689 - photosystem I P700 chlorophyll a apoprotein A1 (psaA) Genomic Order:  13
Name:  ? Thecc1EG046383 Secondary Identifier:  ? PAC:27459578
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-101 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046383 0.5kb upstream 0.5kb upstream 3085 true cacao1chloroplast: 40937-44021 Theobroma cacao
Thecc1EG046383 0.5kb upstream 0.5kb upstream 500 false cacao1chloroplast: 43522-44021 Theobroma cacao
Thecc1EG046383 0.5kb downstream 0.5kb downstream 3085 true cacao1chloroplast: 40437-43521 Theobroma cacao
Thecc1EG046383 0.5kb downstream 0.5kb downstream 500 false cacao1chloroplast: 40437-40936 Theobroma cacao
Thecc1EG046383 1.0kb upstream 1.0kb upstream 3585 true cacao1chloroplast: 40937-44521 Theobroma cacao
Thecc1EG046383 1.0kb upstream 1.0kb upstream 1000 false cacao1chloroplast: 43522-44521 Theobroma cacao
Thecc1EG046383 1.0kb downstream 1.0kb downstream 3585 true cacao1chloroplast: 39937-43521 Theobroma cacao
Thecc1EG046383 1.0kb downstream 1.0kb downstream 1000 false cacao1chloroplast: 39937-40936 Theobroma cacao
Thecc1EG046383 2.0kb upstream 2.0kb upstream 4585 true cacao1chloroplast: 40937-45521 Theobroma cacao
Thecc1EG046383 2.0kb upstream 2.0kb upstream 2000 false cacao1chloroplast: 43522-45521 Theobroma cacao
Thecc1EG046383 2.0kb downstream 2.0kb downstream 4585 true cacao1chloroplast: 38937-43521 Theobroma cacao
Thecc1EG046383 2.0kb downstream 2.0kb downstream 2000 false cacao1chloroplast: 38937-40936 Theobroma cacao
Thecc1EG046383 5.0kb upstream 5.0kb upstream 7585 true cacao1chloroplast: 40937-48521 Theobroma cacao
Thecc1EG046383 5.0kb upstream 5.0kb upstream 5000 false cacao1chloroplast: 43522-48521 Theobroma cacao
Thecc1EG046383 5.0kb downstream 5.0kb downstream 7585 true cacao1chloroplast: 35937-43521 Theobroma cacao
Thecc1EG046383 5.0kb downstream 5.0kb downstream 5000 false cacao1chloroplast: 35937-40936 Theobroma cacao
Thecc1EG046383 10.0kb upstream 10.0kb upstream 12585 true cacao1chloroplast: 40937-53521 Theobroma cacao
Thecc1EG046383 10.0kb upstream 10.0kb upstream 10000 false cacao1chloroplast: 43522-53521 Theobroma cacao
Thecc1EG046383 10.0kb downstream 10.0kb downstream 12585 true cacao1chloroplast: 30937-43521 Theobroma cacao
Thecc1EG046383 10.0kb downstream 10.0kb downstream 10000 false cacao1chloroplast: 30937-40936 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
123829253 5264 Brassicales-Malvales View MSA
124321585 5266 SBM View MSA
124245218 5268 Malvidae View MSA
124039340 5270 Rosid View MSA
123753575 5271 Pentapetalae View MSA
122795398 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain