Gene : Thecc1EG046380 T. cacao v1.1
Defline:  (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD) Genomic Order:  10
Name:  ? Thecc1EG046380 Secondary Identifier:  ? PAC:27459547
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-101 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046380 0.5kb upstream 0.5kb upstream 2189 true cacao1chloroplast: 33086-35274 Theobroma cacao
Thecc1EG046380 0.5kb upstream 0.5kb upstream 500 false cacao1chloroplast: 33086-33585 Theobroma cacao
Thecc1EG046380 0.5kb downstream 0.5kb downstream 2189 true cacao1chloroplast: 33586-35774 Theobroma cacao
Thecc1EG046380 0.5kb downstream 0.5kb downstream 500 false cacao1chloroplast: 35275-35774 Theobroma cacao
Thecc1EG046380 1.0kb upstream 1.0kb upstream 2689 true cacao1chloroplast: 32586-35274 Theobroma cacao
Thecc1EG046380 1.0kb upstream 1.0kb upstream 1000 false cacao1chloroplast: 32586-33585 Theobroma cacao
Thecc1EG046380 1.0kb downstream 1.0kb downstream 2689 true cacao1chloroplast: 33586-36274 Theobroma cacao
Thecc1EG046380 1.0kb downstream 1.0kb downstream 1000 false cacao1chloroplast: 35275-36274 Theobroma cacao
Thecc1EG046380 2.0kb upstream 2.0kb upstream 3689 true cacao1chloroplast: 31586-35274 Theobroma cacao
Thecc1EG046380 2.0kb upstream 2.0kb upstream 2000 false cacao1chloroplast: 31586-33585 Theobroma cacao
Thecc1EG046380 2.0kb downstream 2.0kb downstream 3689 true cacao1chloroplast: 33586-37274 Theobroma cacao
Thecc1EG046380 2.0kb downstream 2.0kb downstream 2000 false cacao1chloroplast: 35275-37274 Theobroma cacao
Thecc1EG046380 5.0kb upstream 5.0kb upstream 6689 true cacao1chloroplast: 28586-35274 Theobroma cacao
Thecc1EG046380 5.0kb upstream 5.0kb upstream 5000 false cacao1chloroplast: 28586-33585 Theobroma cacao
Thecc1EG046380 5.0kb downstream 5.0kb downstream 6689 true cacao1chloroplast: 33586-40274 Theobroma cacao
Thecc1EG046380 5.0kb downstream 5.0kb downstream 5000 false cacao1chloroplast: 35275-40274 Theobroma cacao
Thecc1EG046380 10.0kb upstream 10.0kb upstream 11689 true cacao1chloroplast: 23586-35274 Theobroma cacao
Thecc1EG046380 10.0kb upstream 10.0kb upstream 10000 false cacao1chloroplast: 23586-33585 Theobroma cacao
Thecc1EG046380 10.0kb downstream 10.0kb downstream 11689 true cacao1chloroplast: 33586-45274 Theobroma cacao
Thecc1EG046380 10.0kb downstream 10.0kb downstream 10000 false cacao1chloroplast: 35275-45274 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841499 5264 Brassicales-Malvales View MSA
124322948 5266 SBM View MSA
124254176 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain