Gene : Thecc1EG000094 T. cacao v1.1
Defline:  (1 of 8) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  76
Name:  ? Thecc1EG000094 Secondary Identifier:  ? PAC:27431877
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000094 0.5kb upstream 0.5kb upstream 853 true scaffold_1: 396891-397743 Theobroma cacao
Thecc1EG000094 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 396891-397390 Theobroma cacao
Thecc1EG000094 0.5kb downstream 0.5kb downstream 853 true scaffold_1: 397391-398243 Theobroma cacao
Thecc1EG000094 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 397744-398243 Theobroma cacao
Thecc1EG000094 1.0kb upstream 1.0kb upstream 1353 true scaffold_1: 396391-397743 Theobroma cacao
Thecc1EG000094 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 396391-397390 Theobroma cacao
Thecc1EG000094 1.0kb downstream 1.0kb downstream 1353 true scaffold_1: 397391-398743 Theobroma cacao
Thecc1EG000094 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 397744-398743 Theobroma cacao
Thecc1EG000094 2.0kb upstream 2.0kb upstream 2353 true scaffold_1: 395391-397743 Theobroma cacao
Thecc1EG000094 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 395391-397390 Theobroma cacao
Thecc1EG000094 2.0kb downstream 2.0kb downstream 2353 true scaffold_1: 397391-399743 Theobroma cacao
Thecc1EG000094 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 397744-399743 Theobroma cacao
Thecc1EG000094 5.0kb upstream 5.0kb upstream 5353 true scaffold_1: 392391-397743 Theobroma cacao
Thecc1EG000094 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 392391-397390 Theobroma cacao
Thecc1EG000094 5.0kb downstream 5.0kb downstream 5353 true scaffold_1: 397391-402743 Theobroma cacao
Thecc1EG000094 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 397744-402743 Theobroma cacao
Thecc1EG000094 10.0kb upstream 10.0kb upstream 10353 true scaffold_1: 387391-397743 Theobroma cacao
Thecc1EG000094 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 387391-397390 Theobroma cacao
Thecc1EG000094 10.0kb downstream 10.0kb downstream 10353 true scaffold_1: 397391-407743 Theobroma cacao
Thecc1EG000094 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 397744-407743 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain