Gene : Thecc1EG000204 T. cacao v1.1
Defline:  (1 of 2) PTHR23042//PTHR23042:SF70 - CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS // TRANSCRIPTION FACTOR BHLH121 Genomic Order:  172
Name:  ? Thecc1EG000204 Secondary Identifier:  ? PAC:27436411
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000204 0.5kb upstream 0.5kb upstream 3810 true scaffold_1: 797736-801545 Theobroma cacao
Thecc1EG000204 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 797736-798235 Theobroma cacao
Thecc1EG000204 0.5kb downstream 0.5kb downstream 3810 true scaffold_1: 798236-802045 Theobroma cacao
Thecc1EG000204 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 801546-802045 Theobroma cacao
Thecc1EG000204 1.0kb upstream 1.0kb upstream 4310 true scaffold_1: 797236-801545 Theobroma cacao
Thecc1EG000204 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 797236-798235 Theobroma cacao
Thecc1EG000204 1.0kb downstream 1.0kb downstream 4310 true scaffold_1: 798236-802545 Theobroma cacao
Thecc1EG000204 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 801546-802545 Theobroma cacao
Thecc1EG000204 2.0kb upstream 2.0kb upstream 5310 true scaffold_1: 796236-801545 Theobroma cacao
Thecc1EG000204 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 796236-798235 Theobroma cacao
Thecc1EG000204 2.0kb downstream 2.0kb downstream 5310 true scaffold_1: 798236-803545 Theobroma cacao
Thecc1EG000204 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 801546-803545 Theobroma cacao
Thecc1EG000204 5.0kb upstream 5.0kb upstream 8310 true scaffold_1: 793236-801545 Theobroma cacao
Thecc1EG000204 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 793236-798235 Theobroma cacao
Thecc1EG000204 5.0kb downstream 5.0kb downstream 8310 true scaffold_1: 798236-806545 Theobroma cacao
Thecc1EG000204 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 801546-806545 Theobroma cacao
Thecc1EG000204 10.0kb upstream 10.0kb upstream 13310 true scaffold_1: 788236-801545 Theobroma cacao
Thecc1EG000204 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 788236-798235 Theobroma cacao
Thecc1EG000204 10.0kb downstream 10.0kb downstream 13310 true scaffold_1: 798236-811545 Theobroma cacao
Thecc1EG000204 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 801546-811545 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123824622 5264 Brassicales-Malvales View MSA
124320265 5266 SBM View MSA
124253718 5268 Malvidae View MSA
124070244 5270 Rosid View MSA
123741590 5271 Pentapetalae View MSA
122787176 5272 Eudicot View MSA
122044720 5273 Angiosperm View MSA
121351586 5274 Embryophyte View MSA
123427389 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain