Gene : Thecc1EG000189 T. cacao v1.1
Defline:  (1 of 1) 2.1.1.176//2.1.1.203 - 16S rRNA (cytosine(967)-C(5))-methyltransferase // tRNA (cytosine(34)-C(5))-methyltransferase Genomic Order:  157
Name:  ? Thecc1EG000189 Secondary Identifier:  ? PAC:27436740
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6829 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000189 0.5kb upstream 0.5kb upstream 4598 true scaffold_1: 729208-733805 Theobroma cacao
Thecc1EG000189 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 729208-729707 Theobroma cacao
Thecc1EG000189 0.5kb downstream 0.5kb downstream 4598 true scaffold_1: 729708-734305 Theobroma cacao
Thecc1EG000189 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 733806-734305 Theobroma cacao
Thecc1EG000189 1.0kb upstream 1.0kb upstream 5098 true scaffold_1: 728708-733805 Theobroma cacao
Thecc1EG000189 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 728708-729707 Theobroma cacao
Thecc1EG000189 1.0kb downstream 1.0kb downstream 5098 true scaffold_1: 729708-734805 Theobroma cacao
Thecc1EG000189 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 733806-734805 Theobroma cacao
Thecc1EG000189 2.0kb upstream 2.0kb upstream 6098 true scaffold_1: 727708-733805 Theobroma cacao
Thecc1EG000189 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 727708-729707 Theobroma cacao
Thecc1EG000189 2.0kb downstream 2.0kb downstream 6098 true scaffold_1: 729708-735805 Theobroma cacao
Thecc1EG000189 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 733806-735805 Theobroma cacao
Thecc1EG000189 5.0kb upstream 5.0kb upstream 9098 true scaffold_1: 724708-733805 Theobroma cacao
Thecc1EG000189 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 724708-729707 Theobroma cacao
Thecc1EG000189 5.0kb downstream 5.0kb downstream 9098 true scaffold_1: 729708-738805 Theobroma cacao
Thecc1EG000189 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 733806-738805 Theobroma cacao
Thecc1EG000189 10.0kb upstream 10.0kb upstream 14098 true scaffold_1: 719708-733805 Theobroma cacao
Thecc1EG000189 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 719708-729707 Theobroma cacao
Thecc1EG000189 10.0kb downstream 10.0kb downstream 14098 true scaffold_1: 729708-743805 Theobroma cacao
Thecc1EG000189 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 733806-743805 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833659 5264 Brassicales-Malvales View MSA
124342565 5266 SBM View MSA
124239700 5268 Malvidae View MSA
124050429 5270 Rosid View MSA
123737696 5271 Pentapetalae View MSA
122785944 5272 Eudicot View MSA
122044592 5273 Angiosperm View MSA
121346334 5274 Embryophyte View MSA
123425870 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain