Gene : Thecc1EG000401 T. cacao v1.1
Defline:  (1 of 1) K00234 - succinate dehydrogenase (ubiquinone) flavoprotein subunit (SDHA, SDH1) Genomic Order:  349
Name:  ? Thecc1EG000401 Secondary Identifier:  ? PAC:27434080
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3781 Theobroma cacao pathologic  
Tcacao PWY-4302 Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-561 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  
Tcacao PWY-7279 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000401 0.5kb upstream 0.5kb upstream 6859 true scaffold_1: 1634689-1641547 Theobroma cacao
Thecc1EG000401 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1641048-1641547 Theobroma cacao
Thecc1EG000401 0.5kb downstream 0.5kb downstream 6859 true scaffold_1: 1634189-1641047 Theobroma cacao
Thecc1EG000401 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1634189-1634688 Theobroma cacao
Thecc1EG000401 1.0kb upstream 1.0kb upstream 7359 true scaffold_1: 1634689-1642047 Theobroma cacao
Thecc1EG000401 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1641048-1642047 Theobroma cacao
Thecc1EG000401 1.0kb downstream 1.0kb downstream 7359 true scaffold_1: 1633689-1641047 Theobroma cacao
Thecc1EG000401 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1633689-1634688 Theobroma cacao
Thecc1EG000401 2.0kb upstream 2.0kb upstream 8359 true scaffold_1: 1634689-1643047 Theobroma cacao
Thecc1EG000401 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1641048-1643047 Theobroma cacao
Thecc1EG000401 2.0kb downstream 2.0kb downstream 8359 true scaffold_1: 1632689-1641047 Theobroma cacao
Thecc1EG000401 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1632689-1634688 Theobroma cacao
Thecc1EG000401 5.0kb upstream 5.0kb upstream 11359 true scaffold_1: 1634689-1646047 Theobroma cacao
Thecc1EG000401 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1641048-1646047 Theobroma cacao
Thecc1EG000401 5.0kb downstream 5.0kb downstream 11359 true scaffold_1: 1629689-1641047 Theobroma cacao
Thecc1EG000401 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1629689-1634688 Theobroma cacao
Thecc1EG000401 10.0kb upstream 10.0kb upstream 16359 true scaffold_1: 1634689-1651047 Theobroma cacao
Thecc1EG000401 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1641048-1651047 Theobroma cacao
Thecc1EG000401 10.0kb downstream 10.0kb downstream 16359 true scaffold_1: 1624689-1641047 Theobroma cacao
Thecc1EG000401 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1624689-1634688 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827742 5264 Brassicales-Malvales View MSA
124339577 5266 SBM View MSA
124254053 5268 Malvidae View MSA
124063356 5270 Rosid View MSA
123753034 5271 Pentapetalae View MSA
122790960 5272 Eudicot View MSA
122043363 5273 Angiosperm View MSA
121346345 5274 Embryophyte View MSA
123424943 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain