Gene : Thecc1EG000334 T. cacao v1.1
Defline:  (1 of 154) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  291
Name:  ? Thecc1EG000334 Secondary Identifier:  ? PAC:27433613
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000334 0.5kb upstream 0.5kb upstream 3531 true scaffold_1: 1372067-1375597 Theobroma cacao
Thecc1EG000334 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1372067-1372566 Theobroma cacao
Thecc1EG000334 0.5kb downstream 0.5kb downstream 3531 true scaffold_1: 1372567-1376097 Theobroma cacao
Thecc1EG000334 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1375598-1376097 Theobroma cacao
Thecc1EG000334 1.0kb upstream 1.0kb upstream 4031 true scaffold_1: 1371567-1375597 Theobroma cacao
Thecc1EG000334 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1371567-1372566 Theobroma cacao
Thecc1EG000334 1.0kb downstream 1.0kb downstream 4031 true scaffold_1: 1372567-1376597 Theobroma cacao
Thecc1EG000334 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1375598-1376597 Theobroma cacao
Thecc1EG000334 2.0kb upstream 2.0kb upstream 5031 true scaffold_1: 1370567-1375597 Theobroma cacao
Thecc1EG000334 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1370567-1372566 Theobroma cacao
Thecc1EG000334 2.0kb downstream 2.0kb downstream 5031 true scaffold_1: 1372567-1377597 Theobroma cacao
Thecc1EG000334 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1375598-1377597 Theobroma cacao
Thecc1EG000334 5.0kb upstream 5.0kb upstream 8031 true scaffold_1: 1367567-1375597 Theobroma cacao
Thecc1EG000334 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1367567-1372566 Theobroma cacao
Thecc1EG000334 5.0kb downstream 5.0kb downstream 8031 true scaffold_1: 1372567-1380597 Theobroma cacao
Thecc1EG000334 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1375598-1380597 Theobroma cacao
Thecc1EG000334 10.0kb upstream 10.0kb upstream 13031 true scaffold_1: 1362567-1375597 Theobroma cacao
Thecc1EG000334 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1362567-1372566 Theobroma cacao
Thecc1EG000334 10.0kb downstream 10.0kb downstream 13031 true scaffold_1: 1372567-1385597 Theobroma cacao
Thecc1EG000334 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1375598-1385597 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121518951 5273 Angiosperm Singleton cluster - no MSA
123815817 5264 Brassicales-Malvales Singleton cluster - no MSA
124312234 5266 SBM Singleton cluster - no MSA
124161431 5268 Malvidae Singleton cluster - no MSA
123885397 5270 Rosid Singleton cluster - no MSA
123467954 5271 Pentapetalae Singleton cluster - no MSA
122503251 5272 Eudicot Singleton cluster - no MSA
120791763 5274 Embryophyte Singleton cluster - no MSA
122833380 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain