Gene : Thecc1EG000479 T. cacao v1.1
Defline:  (1 of 1) PTHR11850//PTHR11850:SF103 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Genomic Order:  416
Name:  ? Thecc1EG000479 Secondary Identifier:  ? PAC:27432123
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000479 0.5kb upstream 0.5kb upstream 7990 true scaffold_1: 1978389-1986378 Theobroma cacao
Thecc1EG000479 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1978389-1978888 Theobroma cacao
Thecc1EG000479 0.5kb downstream 0.5kb downstream 7990 true scaffold_1: 1978889-1986878 Theobroma cacao
Thecc1EG000479 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1986379-1986878 Theobroma cacao
Thecc1EG000479 1.0kb upstream 1.0kb upstream 8490 true scaffold_1: 1977889-1986378 Theobroma cacao
Thecc1EG000479 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1977889-1978888 Theobroma cacao
Thecc1EG000479 1.0kb downstream 1.0kb downstream 8490 true scaffold_1: 1978889-1987378 Theobroma cacao
Thecc1EG000479 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1986379-1987378 Theobroma cacao
Thecc1EG000479 2.0kb upstream 2.0kb upstream 9490 true scaffold_1: 1976889-1986378 Theobroma cacao
Thecc1EG000479 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1976889-1978888 Theobroma cacao
Thecc1EG000479 2.0kb downstream 2.0kb downstream 9490 true scaffold_1: 1978889-1988378 Theobroma cacao
Thecc1EG000479 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1986379-1988378 Theobroma cacao
Thecc1EG000479 5.0kb upstream 5.0kb upstream 12490 true scaffold_1: 1973889-1986378 Theobroma cacao
Thecc1EG000479 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1973889-1978888 Theobroma cacao
Thecc1EG000479 5.0kb downstream 5.0kb downstream 12490 true scaffold_1: 1978889-1991378 Theobroma cacao
Thecc1EG000479 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1986379-1991378 Theobroma cacao
Thecc1EG000479 10.0kb upstream 10.0kb upstream 17490 true scaffold_1: 1968889-1986378 Theobroma cacao
Thecc1EG000479 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1968889-1978888 Theobroma cacao
Thecc1EG000479 10.0kb downstream 10.0kb downstream 17490 true scaffold_1: 1978889-1996378 Theobroma cacao
Thecc1EG000479 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1986379-1996378 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840925 5264 Brassicales-Malvales View MSA
124338294 5266 SBM View MSA
124245086 5268 Malvidae View MSA
124067451 5270 Rosid View MSA
123743533 5271 Pentapetalae View MSA
122796182 5272 Eudicot View MSA
122049932 5273 Angiosperm View MSA
121350603 5274 Embryophyte View MSA
123426094 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain