Gene : Thecc1EG001055 T. cacao v1.1
Defline:  (1 of 1) K15334 - multisite-specific tRNA:(cytosine-C5)-methyltransferase [EC:2.1.1.202] (NCL1, TRM4) Genomic Order:  931
Name:  ? Thecc1EG001055 Secondary Identifier:  ? PAC:27436910
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6829 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001055 0.5kb upstream 0.5kb upstream 7621 true scaffold_1: 4999423-5007043 Theobroma cacao
Thecc1EG001055 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4999423-4999922 Theobroma cacao
Thecc1EG001055 0.5kb downstream 0.5kb downstream 7621 true scaffold_1: 4999923-5007543 Theobroma cacao
Thecc1EG001055 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5007044-5007543 Theobroma cacao
Thecc1EG001055 1.0kb upstream 1.0kb upstream 8121 true scaffold_1: 4998923-5007043 Theobroma cacao
Thecc1EG001055 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4998923-4999922 Theobroma cacao
Thecc1EG001055 1.0kb downstream 1.0kb downstream 8121 true scaffold_1: 4999923-5008043 Theobroma cacao
Thecc1EG001055 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5007044-5008043 Theobroma cacao
Thecc1EG001055 2.0kb upstream 2.0kb upstream 9121 true scaffold_1: 4997923-5007043 Theobroma cacao
Thecc1EG001055 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4997923-4999922 Theobroma cacao
Thecc1EG001055 2.0kb downstream 2.0kb downstream 9121 true scaffold_1: 4999923-5009043 Theobroma cacao
Thecc1EG001055 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5007044-5009043 Theobroma cacao
Thecc1EG001055 5.0kb upstream 5.0kb upstream 12121 true scaffold_1: 4994923-5007043 Theobroma cacao
Thecc1EG001055 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4994923-4999922 Theobroma cacao
Thecc1EG001055 5.0kb downstream 5.0kb downstream 12121 true scaffold_1: 4999923-5012043 Theobroma cacao
Thecc1EG001055 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5007044-5012043 Theobroma cacao
Thecc1EG001055 10.0kb upstream 10.0kb upstream 17121 true scaffold_1: 4989923-5007043 Theobroma cacao
Thecc1EG001055 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4989923-4999922 Theobroma cacao
Thecc1EG001055 10.0kb downstream 10.0kb downstream 17121 true scaffold_1: 4999923-5017043 Theobroma cacao
Thecc1EG001055 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5007044-5017043 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834871 5264 Brassicales-Malvales View MSA
124341938 5266 SBM View MSA
124238434 5268 Malvidae View MSA
124062723 5270 Rosid View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain