Gene : Thecc1EG000964 T. cacao v1.1
Defline:  (1 of 5) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  848
Name:  ? Thecc1EG000964 Secondary Identifier:  ? PAC:27432447
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7560 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000964 0.5kb upstream 0.5kb upstream 18216 true scaffold_1: 4438167-4456382 Theobroma cacao
Thecc1EG000964 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4438167-4438666 Theobroma cacao
Thecc1EG000964 0.5kb downstream 0.5kb downstream 18216 true scaffold_1: 4438667-4456882 Theobroma cacao
Thecc1EG000964 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4456383-4456882 Theobroma cacao
Thecc1EG000964 1.0kb upstream 1.0kb upstream 18716 true scaffold_1: 4437667-4456382 Theobroma cacao
Thecc1EG000964 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4437667-4438666 Theobroma cacao
Thecc1EG000964 1.0kb downstream 1.0kb downstream 18716 true scaffold_1: 4438667-4457382 Theobroma cacao
Thecc1EG000964 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4456383-4457382 Theobroma cacao
Thecc1EG000964 2.0kb upstream 2.0kb upstream 19716 true scaffold_1: 4436667-4456382 Theobroma cacao
Thecc1EG000964 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4436667-4438666 Theobroma cacao
Thecc1EG000964 2.0kb downstream 2.0kb downstream 19716 true scaffold_1: 4438667-4458382 Theobroma cacao
Thecc1EG000964 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4456383-4458382 Theobroma cacao
Thecc1EG000964 5.0kb upstream 5.0kb upstream 22716 true scaffold_1: 4433667-4456382 Theobroma cacao
Thecc1EG000964 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4433667-4438666 Theobroma cacao
Thecc1EG000964 5.0kb downstream 5.0kb downstream 22716 true scaffold_1: 4438667-4461382 Theobroma cacao
Thecc1EG000964 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4456383-4461382 Theobroma cacao
Thecc1EG000964 10.0kb upstream 10.0kb upstream 27716 true scaffold_1: 4428667-4456382 Theobroma cacao
Thecc1EG000964 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4428667-4438666 Theobroma cacao
Thecc1EG000964 10.0kb downstream 10.0kb downstream 27716 true scaffold_1: 4438667-4466382 Theobroma cacao
Thecc1EG000964 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4456383-4466382 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123824275 5264 Brassicales-Malvales View MSA
124348845 5266 SBM View MSA
124246155 5268 Malvidae View MSA
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain