Gene : Thecc1EG001136 T. cacao v1.1
Defline:  (1 of 1) PTHR11921//PTHR11921:SF23 - SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN // SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT 3, MITOCHONDRIAL Genomic Order:  994
Name:  ? Thecc1EG001136 Secondary Identifier:  ? PAC:27435731
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3781 Theobroma cacao pathologic  
Tcacao PWY-4302 Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-561 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  
Tcacao PWY-7279 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001136 0.5kb upstream 0.5kb upstream 2704 true scaffold_1: 5433006-5435709 Theobroma cacao
Thecc1EG001136 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5433006-5433505 Theobroma cacao
Thecc1EG001136 0.5kb downstream 0.5kb downstream 2704 true scaffold_1: 5433506-5436209 Theobroma cacao
Thecc1EG001136 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5435710-5436209 Theobroma cacao
Thecc1EG001136 1.0kb upstream 1.0kb upstream 3204 true scaffold_1: 5432506-5435709 Theobroma cacao
Thecc1EG001136 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5432506-5433505 Theobroma cacao
Thecc1EG001136 1.0kb downstream 1.0kb downstream 3204 true scaffold_1: 5433506-5436709 Theobroma cacao
Thecc1EG001136 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5435710-5436709 Theobroma cacao
Thecc1EG001136 2.0kb upstream 2.0kb upstream 4204 true scaffold_1: 5431506-5435709 Theobroma cacao
Thecc1EG001136 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5431506-5433505 Theobroma cacao
Thecc1EG001136 2.0kb downstream 2.0kb downstream 4204 true scaffold_1: 5433506-5437709 Theobroma cacao
Thecc1EG001136 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5435710-5437709 Theobroma cacao
Thecc1EG001136 5.0kb upstream 5.0kb upstream 7204 true scaffold_1: 5428506-5435709 Theobroma cacao
Thecc1EG001136 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5428506-5433505 Theobroma cacao
Thecc1EG001136 5.0kb downstream 5.0kb downstream 7204 true scaffold_1: 5433506-5440709 Theobroma cacao
Thecc1EG001136 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5435710-5440709 Theobroma cacao
Thecc1EG001136 10.0kb upstream 10.0kb upstream 12204 true scaffold_1: 5423506-5435709 Theobroma cacao
Thecc1EG001136 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5423506-5433505 Theobroma cacao
Thecc1EG001136 10.0kb downstream 10.0kb downstream 12204 true scaffold_1: 5433506-5445709 Theobroma cacao
Thecc1EG001136 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5435710-5445709 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831796 5264 Brassicales-Malvales View MSA
124343953 5266 SBM View MSA
124244083 5268 Malvidae View MSA
124072619 5270 Rosid View MSA
123748072 5271 Pentapetalae View MSA
122787884 5272 Eudicot View MSA
122049105 5273 Angiosperm View MSA
121351479 5274 Embryophyte View MSA
123424532 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain