Gene : Thecc1EG001480 T. cacao v1.1
Defline:  (1 of 1) PTHR23240//PTHR23240:SF11 - DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1271
Name:  ? Thecc1EG001480 Secondary Identifier:  ? PAC:27435507
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001480 0.5kb upstream 0.5kb upstream 6257 true scaffold_1: 7397490-7403746 Theobroma cacao
Thecc1EG001480 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7397490-7397989 Theobroma cacao
Thecc1EG001480 0.5kb downstream 0.5kb downstream 6257 true scaffold_1: 7397990-7404246 Theobroma cacao
Thecc1EG001480 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7403747-7404246 Theobroma cacao
Thecc1EG001480 1.0kb upstream 1.0kb upstream 6757 true scaffold_1: 7396990-7403746 Theobroma cacao
Thecc1EG001480 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7396990-7397989 Theobroma cacao
Thecc1EG001480 1.0kb downstream 1.0kb downstream 6757 true scaffold_1: 7397990-7404746 Theobroma cacao
Thecc1EG001480 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7403747-7404746 Theobroma cacao
Thecc1EG001480 2.0kb upstream 2.0kb upstream 7757 true scaffold_1: 7395990-7403746 Theobroma cacao
Thecc1EG001480 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7395990-7397989 Theobroma cacao
Thecc1EG001480 2.0kb downstream 2.0kb downstream 7757 true scaffold_1: 7397990-7405746 Theobroma cacao
Thecc1EG001480 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7403747-7405746 Theobroma cacao
Thecc1EG001480 5.0kb upstream 5.0kb upstream 10757 true scaffold_1: 7392990-7403746 Theobroma cacao
Thecc1EG001480 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7392990-7397989 Theobroma cacao
Thecc1EG001480 5.0kb downstream 5.0kb downstream 10757 true scaffold_1: 7397990-7408746 Theobroma cacao
Thecc1EG001480 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7403747-7408746 Theobroma cacao
Thecc1EG001480 10.0kb upstream 10.0kb upstream 15757 true scaffold_1: 7387990-7403746 Theobroma cacao
Thecc1EG001480 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7387990-7397989 Theobroma cacao
Thecc1EG001480 10.0kb downstream 10.0kb downstream 15757 true scaffold_1: 7397990-7413746 Theobroma cacao
Thecc1EG001480 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7403747-7413746 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833863 5264 Brassicales-Malvales View MSA
124336941 5266 SBM View MSA
124239407 5268 Malvidae View MSA
124068668 5270 Rosid View MSA
123740105 5271 Pentapetalae View MSA
122792386 5272 Eudicot View MSA
122043083 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain