Gene : Thecc1EG001359 T. cacao v1.1
Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1) Genomic Order:  1172
Name:  ? Thecc1EG001359 Secondary Identifier:  ? PAC:27431383
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao ARGSYNBSUB-PWY Theobroma cacao pathologic  
Tcacao ARGSYN-PWY Theobroma cacao pathologic  
Tcacao CITRULBIO-PWY Theobroma cacao pathologic  
Tcacao GLUTAMINDEG-PWY Theobroma cacao pathologic  
Tcacao PWY0-162 Theobroma cacao pathologic  
Tcacao PWY-4984 Theobroma cacao pathologic  
Tcacao PWY-5686 Theobroma cacao pathologic  
Tcacao PWY-7211 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001359 0.5kb upstream 0.5kb upstream 4165 true scaffold_1: 6688336-6692500 Theobroma cacao
Thecc1EG001359 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6688336-6688835 Theobroma cacao
Thecc1EG001359 0.5kb downstream 0.5kb downstream 4165 true scaffold_1: 6688836-6693000 Theobroma cacao
Thecc1EG001359 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6692501-6693000 Theobroma cacao
Thecc1EG001359 1.0kb upstream 1.0kb upstream 4665 true scaffold_1: 6687836-6692500 Theobroma cacao
Thecc1EG001359 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6687836-6688835 Theobroma cacao
Thecc1EG001359 1.0kb downstream 1.0kb downstream 4665 true scaffold_1: 6688836-6693500 Theobroma cacao
Thecc1EG001359 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6692501-6693500 Theobroma cacao
Thecc1EG001359 2.0kb upstream 2.0kb upstream 5665 true scaffold_1: 6686836-6692500 Theobroma cacao
Thecc1EG001359 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6686836-6688835 Theobroma cacao
Thecc1EG001359 2.0kb downstream 2.0kb downstream 5665 true scaffold_1: 6688836-6694500 Theobroma cacao
Thecc1EG001359 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6692501-6694500 Theobroma cacao
Thecc1EG001359 5.0kb upstream 5.0kb upstream 8665 true scaffold_1: 6683836-6692500 Theobroma cacao
Thecc1EG001359 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6683836-6688835 Theobroma cacao
Thecc1EG001359 5.0kb downstream 5.0kb downstream 8665 true scaffold_1: 6688836-6697500 Theobroma cacao
Thecc1EG001359 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6692501-6697500 Theobroma cacao
Thecc1EG001359 10.0kb upstream 10.0kb upstream 13665 true scaffold_1: 6678836-6692500 Theobroma cacao
Thecc1EG001359 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6678836-6688835 Theobroma cacao
Thecc1EG001359 10.0kb downstream 10.0kb downstream 13665 true scaffold_1: 6688836-6702500 Theobroma cacao
Thecc1EG001359 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6692501-6702500 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839532 5264 Brassicales-Malvales View MSA
124338612 5266 SBM View MSA
124252256 5268 Malvidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain