Gene : Thecc1EG001609 T. cacao v1.1
Defline:  (1 of 1) K17872 - NADH:ubiquinone reductase (non-electrogenic) (ndh2) Genomic Order:  1376
Name:  ? Thecc1EG001609 Secondary Identifier:  ? PAC:27436670
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7279 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001609 0.5kb upstream 0.5kb upstream 6894 true scaffold_1: 8198065-8204958 Theobroma cacao
Thecc1EG001609 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8198065-8198564 Theobroma cacao
Thecc1EG001609 0.5kb downstream 0.5kb downstream 6894 true scaffold_1: 8198565-8205458 Theobroma cacao
Thecc1EG001609 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8204959-8205458 Theobroma cacao
Thecc1EG001609 1.0kb upstream 1.0kb upstream 7394 true scaffold_1: 8197565-8204958 Theobroma cacao
Thecc1EG001609 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8197565-8198564 Theobroma cacao
Thecc1EG001609 1.0kb downstream 1.0kb downstream 7394 true scaffold_1: 8198565-8205958 Theobroma cacao
Thecc1EG001609 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8204959-8205958 Theobroma cacao
Thecc1EG001609 2.0kb upstream 2.0kb upstream 8394 true scaffold_1: 8196565-8204958 Theobroma cacao
Thecc1EG001609 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8196565-8198564 Theobroma cacao
Thecc1EG001609 2.0kb downstream 2.0kb downstream 8394 true scaffold_1: 8198565-8206958 Theobroma cacao
Thecc1EG001609 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8204959-8206958 Theobroma cacao
Thecc1EG001609 5.0kb upstream 5.0kb upstream 11394 true scaffold_1: 8193565-8204958 Theobroma cacao
Thecc1EG001609 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8193565-8198564 Theobroma cacao
Thecc1EG001609 5.0kb downstream 5.0kb downstream 11394 true scaffold_1: 8198565-8209958 Theobroma cacao
Thecc1EG001609 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8204959-8209958 Theobroma cacao
Thecc1EG001609 10.0kb upstream 10.0kb upstream 16394 true scaffold_1: 8188565-8204958 Theobroma cacao
Thecc1EG001609 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8188565-8198564 Theobroma cacao
Thecc1EG001609 10.0kb downstream 10.0kb downstream 16394 true scaffold_1: 8198565-8214958 Theobroma cacao
Thecc1EG001609 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8204959-8214958 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833166 5264 Brassicales-Malvales View MSA
124337144 5266 SBM View MSA
124242245 5268 Malvidae View MSA
124064552 5270 Rosid View MSA
123736463 5271 Pentapetalae View MSA
122787892 5272 Eudicot View MSA
122042491 5273 Angiosperm View MSA
121344748 5274 Embryophyte View MSA
123426339 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain