Gene : Thecc1EG001783 T. cacao v1.1
Defline:  (1 of 6) KOG2930 - SCF ubiquitin ligase, Rbx1 component Genomic Order:  1512
Name:  ? Thecc1EG001783 Secondary Identifier:  ? PAC:27434718
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001783 0.5kb upstream 0.5kb upstream 1484 true scaffold_1: 9431075-9432558 Theobroma cacao
Thecc1EG001783 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9431075-9431574 Theobroma cacao
Thecc1EG001783 0.5kb downstream 0.5kb downstream 1484 true scaffold_1: 9431575-9433058 Theobroma cacao
Thecc1EG001783 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9432559-9433058 Theobroma cacao
Thecc1EG001783 1.0kb upstream 1.0kb upstream 1984 true scaffold_1: 9430575-9432558 Theobroma cacao
Thecc1EG001783 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9430575-9431574 Theobroma cacao
Thecc1EG001783 1.0kb downstream 1.0kb downstream 1984 true scaffold_1: 9431575-9433558 Theobroma cacao
Thecc1EG001783 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9432559-9433558 Theobroma cacao
Thecc1EG001783 2.0kb upstream 2.0kb upstream 2984 true scaffold_1: 9429575-9432558 Theobroma cacao
Thecc1EG001783 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9429575-9431574 Theobroma cacao
Thecc1EG001783 2.0kb downstream 2.0kb downstream 2984 true scaffold_1: 9431575-9434558 Theobroma cacao
Thecc1EG001783 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9432559-9434558 Theobroma cacao
Thecc1EG001783 5.0kb upstream 5.0kb upstream 5984 true scaffold_1: 9426575-9432558 Theobroma cacao
Thecc1EG001783 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9426575-9431574 Theobroma cacao
Thecc1EG001783 5.0kb downstream 5.0kb downstream 5984 true scaffold_1: 9431575-9437558 Theobroma cacao
Thecc1EG001783 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9432559-9437558 Theobroma cacao
Thecc1EG001783 10.0kb upstream 10.0kb upstream 10984 true scaffold_1: 9421575-9432558 Theobroma cacao
Thecc1EG001783 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9421575-9431574 Theobroma cacao
Thecc1EG001783 10.0kb downstream 10.0kb downstream 10984 true scaffold_1: 9431575-9442558 Theobroma cacao
Thecc1EG001783 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9432559-9442558 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123825881 5264 Brassicales-Malvales View MSA
124320801 5266 SBM View MSA
124252360 5268 Malvidae View MSA
124074172 5270 Rosid View MSA
123753748 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain