Gene : Thecc1EG001710 T. cacao v1.1
Defline:  (1 of 1) PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Genomic Order:  1465
Name:  ? Thecc1EG001710 Secondary Identifier:  ? PAC:27432173
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001710 0.5kb upstream 0.5kb upstream 3993 true scaffold_1: 8954700-8958692 Theobroma cacao
Thecc1EG001710 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8954700-8955199 Theobroma cacao
Thecc1EG001710 0.5kb downstream 0.5kb downstream 3993 true scaffold_1: 8955200-8959192 Theobroma cacao
Thecc1EG001710 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8958693-8959192 Theobroma cacao
Thecc1EG001710 1.0kb upstream 1.0kb upstream 4493 true scaffold_1: 8954200-8958692 Theobroma cacao
Thecc1EG001710 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8954200-8955199 Theobroma cacao
Thecc1EG001710 1.0kb downstream 1.0kb downstream 4493 true scaffold_1: 8955200-8959692 Theobroma cacao
Thecc1EG001710 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8958693-8959692 Theobroma cacao
Thecc1EG001710 2.0kb upstream 2.0kb upstream 5493 true scaffold_1: 8953200-8958692 Theobroma cacao
Thecc1EG001710 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8953200-8955199 Theobroma cacao
Thecc1EG001710 2.0kb downstream 2.0kb downstream 5493 true scaffold_1: 8955200-8960692 Theobroma cacao
Thecc1EG001710 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8958693-8960692 Theobroma cacao
Thecc1EG001710 5.0kb upstream 5.0kb upstream 8493 true scaffold_1: 8950200-8958692 Theobroma cacao
Thecc1EG001710 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8950200-8955199 Theobroma cacao
Thecc1EG001710 5.0kb downstream 5.0kb downstream 8493 true scaffold_1: 8955200-8963692 Theobroma cacao
Thecc1EG001710 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8958693-8963692 Theobroma cacao
Thecc1EG001710 10.0kb upstream 10.0kb upstream 13493 true scaffold_1: 8945200-8958692 Theobroma cacao
Thecc1EG001710 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8945200-8955199 Theobroma cacao
Thecc1EG001710 10.0kb downstream 10.0kb downstream 13493 true scaffold_1: 8955200-8968692 Theobroma cacao
Thecc1EG001710 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8958693-8968692 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
123840948 5264 Brassicales-Malvales View MSA
124343824 5266 SBM View MSA
124247964 5268 Malvidae View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain