Gene : Thecc1EG001906 T. cacao v1.1
Defline:  (1 of 13) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  1603
Name:  ? Thecc1EG001906 Secondary Identifier:  ? PAC:27434687
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001906 0.5kb upstream 0.5kb upstream 11071 true scaffold_1: 10189733-10200803 Theobroma cacao
Thecc1EG001906 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10200304-10200803 Theobroma cacao
Thecc1EG001906 0.5kb downstream 0.5kb downstream 11071 true scaffold_1: 10189233-10200303 Theobroma cacao
Thecc1EG001906 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10189233-10189732 Theobroma cacao
Thecc1EG001906 1.0kb upstream 1.0kb upstream 11571 true scaffold_1: 10189733-10201303 Theobroma cacao
Thecc1EG001906 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10200304-10201303 Theobroma cacao
Thecc1EG001906 1.0kb downstream 1.0kb downstream 11571 true scaffold_1: 10188733-10200303 Theobroma cacao
Thecc1EG001906 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10188733-10189732 Theobroma cacao
Thecc1EG001906 2.0kb upstream 2.0kb upstream 12571 true scaffold_1: 10189733-10202303 Theobroma cacao
Thecc1EG001906 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10200304-10202303 Theobroma cacao
Thecc1EG001906 2.0kb downstream 2.0kb downstream 12571 true scaffold_1: 10187733-10200303 Theobroma cacao
Thecc1EG001906 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10187733-10189732 Theobroma cacao
Thecc1EG001906 5.0kb upstream 5.0kb upstream 15571 true scaffold_1: 10189733-10205303 Theobroma cacao
Thecc1EG001906 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10200304-10205303 Theobroma cacao
Thecc1EG001906 5.0kb downstream 5.0kb downstream 15571 true scaffold_1: 10184733-10200303 Theobroma cacao
Thecc1EG001906 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10184733-10189732 Theobroma cacao
Thecc1EG001906 10.0kb upstream 10.0kb upstream 20571 true scaffold_1: 10189733-10210303 Theobroma cacao
Thecc1EG001906 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10200304-10210303 Theobroma cacao
Thecc1EG001906 10.0kb downstream 10.0kb downstream 20571 true scaffold_1: 10179733-10200303 Theobroma cacao
Thecc1EG001906 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10179733-10189732 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123824356 5264 Brassicales-Malvales View MSA
124348763 5266 SBM View MSA
124245214 5268 Malvidae View MSA
124073389 5270 Rosid View MSA
123749111 5271 Pentapetalae View MSA
122793528 5272 Eudicot View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain