Gene : Thecc1EG002346 T. cacao v1.1
Defline:  (1 of 467) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1871
Name:  ? Thecc1EG002346 Secondary Identifier:  ? PAC:27432311
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG002346 0.5kb upstream 0.5kb upstream 3904 true scaffold_1: 13305707-13309610 Theobroma cacao
Thecc1EG002346 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 13305707-13306206 Theobroma cacao
Thecc1EG002346 0.5kb downstream 0.5kb downstream 3904 true scaffold_1: 13306207-13310110 Theobroma cacao
Thecc1EG002346 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 13309611-13310110 Theobroma cacao
Thecc1EG002346 1.0kb upstream 1.0kb upstream 4404 true scaffold_1: 13305207-13309610 Theobroma cacao
Thecc1EG002346 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 13305207-13306206 Theobroma cacao
Thecc1EG002346 1.0kb downstream 1.0kb downstream 4404 true scaffold_1: 13306207-13310610 Theobroma cacao
Thecc1EG002346 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 13309611-13310610 Theobroma cacao
Thecc1EG002346 2.0kb upstream 2.0kb upstream 5404 true scaffold_1: 13304207-13309610 Theobroma cacao
Thecc1EG002346 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 13304207-13306206 Theobroma cacao
Thecc1EG002346 2.0kb downstream 2.0kb downstream 5404 true scaffold_1: 13306207-13311610 Theobroma cacao
Thecc1EG002346 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 13309611-13311610 Theobroma cacao
Thecc1EG002346 5.0kb upstream 5.0kb upstream 8404 true scaffold_1: 13301207-13309610 Theobroma cacao
Thecc1EG002346 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 13301207-13306206 Theobroma cacao
Thecc1EG002346 5.0kb downstream 5.0kb downstream 8404 true scaffold_1: 13306207-13314610 Theobroma cacao
Thecc1EG002346 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 13309611-13314610 Theobroma cacao
Thecc1EG002346 10.0kb upstream 10.0kb upstream 13404 true scaffold_1: 13296207-13309610 Theobroma cacao
Thecc1EG002346 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 13296207-13306206 Theobroma cacao
Thecc1EG002346 10.0kb downstream 10.0kb downstream 13404 true scaffold_1: 13306207-13319610 Theobroma cacao
Thecc1EG002346 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 13309611-13319610 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834165 5264 Brassicales-Malvales View MSA
124344064 5266 SBM View MSA
124239137 5268 Malvidae View MSA
124073519 5270 Rosid View MSA
123739768 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain