Gene : Thecc1EG002297 T. cacao v1.1
Defline:  (1 of 1) PTHR11451//PTHR11451:SF32 - TRNA SYNTHETASE-RELATED // THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE-RELATED Genomic Order:  1835
Name:  ? Thecc1EG002297 Secondary Identifier:  ? PAC:27433353
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG002297 0.5kb upstream 0.5kb upstream 5054 true scaffold_1: 12950224-12955277 Theobroma cacao
Thecc1EG002297 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12954778-12955277 Theobroma cacao
Thecc1EG002297 0.5kb downstream 0.5kb downstream 5054 true scaffold_1: 12949724-12954777 Theobroma cacao
Thecc1EG002297 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12949724-12950223 Theobroma cacao
Thecc1EG002297 1.0kb upstream 1.0kb upstream 5554 true scaffold_1: 12950224-12955777 Theobroma cacao
Thecc1EG002297 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12954778-12955777 Theobroma cacao
Thecc1EG002297 1.0kb downstream 1.0kb downstream 5554 true scaffold_1: 12949224-12954777 Theobroma cacao
Thecc1EG002297 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12949224-12950223 Theobroma cacao
Thecc1EG002297 2.0kb upstream 2.0kb upstream 6554 true scaffold_1: 12950224-12956777 Theobroma cacao
Thecc1EG002297 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12954778-12956777 Theobroma cacao
Thecc1EG002297 2.0kb downstream 2.0kb downstream 6554 true scaffold_1: 12948224-12954777 Theobroma cacao
Thecc1EG002297 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12948224-12950223 Theobroma cacao
Thecc1EG002297 5.0kb upstream 5.0kb upstream 9554 true scaffold_1: 12950224-12959777 Theobroma cacao
Thecc1EG002297 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12954778-12959777 Theobroma cacao
Thecc1EG002297 5.0kb downstream 5.0kb downstream 9554 true scaffold_1: 12945224-12954777 Theobroma cacao
Thecc1EG002297 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12945224-12950223 Theobroma cacao
Thecc1EG002297 10.0kb upstream 10.0kb upstream 14554 true scaffold_1: 12950224-12964777 Theobroma cacao
Thecc1EG002297 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12954778-12964777 Theobroma cacao
Thecc1EG002297 10.0kb downstream 10.0kb downstream 14554 true scaffold_1: 12940224-12954777 Theobroma cacao
Thecc1EG002297 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12940224-12950223 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831933 5264 Brassicales-Malvales View MSA
124337778 5266 SBM View MSA
124251834 5268 Malvidae View MSA
124062778 5270 Rosid View MSA
123739350 5271 Pentapetalae View MSA
122793542 5272 Eudicot View MSA
122044606 5273 Angiosperm View MSA
121343894 5274 Embryophyte View MSA
123425201 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain