Gene : Thecc1EG002694 T. cacao v1.1
Defline:  (1 of 1) PTHR22594//PTHR22594:SF36 - ASPARTYL/LYSYL-TRNA SYNTHETASE // ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2 Genomic Order:  2069
Name:  ? Thecc1EG002694 Secondary Identifier:  ? PAC:27435788
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG002694 0.5kb upstream 0.5kb upstream 6112 true scaffold_1: 15694923-15701034 Theobroma cacao
Thecc1EG002694 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 15694923-15695422 Theobroma cacao
Thecc1EG002694 0.5kb downstream 0.5kb downstream 6112 true scaffold_1: 15695423-15701534 Theobroma cacao
Thecc1EG002694 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 15701035-15701534 Theobroma cacao
Thecc1EG002694 1.0kb upstream 1.0kb upstream 6612 true scaffold_1: 15694423-15701034 Theobroma cacao
Thecc1EG002694 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 15694423-15695422 Theobroma cacao
Thecc1EG002694 1.0kb downstream 1.0kb downstream 6612 true scaffold_1: 15695423-15702034 Theobroma cacao
Thecc1EG002694 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 15701035-15702034 Theobroma cacao
Thecc1EG002694 2.0kb upstream 2.0kb upstream 7612 true scaffold_1: 15693423-15701034 Theobroma cacao
Thecc1EG002694 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 15693423-15695422 Theobroma cacao
Thecc1EG002694 2.0kb downstream 2.0kb downstream 7612 true scaffold_1: 15695423-15703034 Theobroma cacao
Thecc1EG002694 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 15701035-15703034 Theobroma cacao
Thecc1EG002694 5.0kb upstream 5.0kb upstream 10612 true scaffold_1: 15690423-15701034 Theobroma cacao
Thecc1EG002694 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 15690423-15695422 Theobroma cacao
Thecc1EG002694 5.0kb downstream 5.0kb downstream 10612 true scaffold_1: 15695423-15706034 Theobroma cacao
Thecc1EG002694 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 15701035-15706034 Theobroma cacao
Thecc1EG002694 10.0kb upstream 10.0kb upstream 15612 true scaffold_1: 15685423-15701034 Theobroma cacao
Thecc1EG002694 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 15685423-15695422 Theobroma cacao
Thecc1EG002694 10.0kb downstream 10.0kb downstream 15612 true scaffold_1: 15695423-15711034 Theobroma cacao
Thecc1EG002694 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 15701035-15711034 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830836 5264 Brassicales-Malvales View MSA
124344086 5266 SBM View MSA
124250826 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain