Gene : Thecc1EG003125 T. cacao v1.1
Defline:  (1 of 2) PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Genomic Order:  2279
Name:  ? Thecc1EG003125 Secondary Identifier:  ? PAC:27432891
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003125 0.5kb upstream 0.5kb upstream 7021 true scaffold_1: 19451864-19458884 Theobroma cacao
Thecc1EG003125 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19458385-19458884 Theobroma cacao
Thecc1EG003125 0.5kb downstream 0.5kb downstream 7021 true scaffold_1: 19451364-19458384 Theobroma cacao
Thecc1EG003125 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19451364-19451863 Theobroma cacao
Thecc1EG003125 1.0kb upstream 1.0kb upstream 7521 true scaffold_1: 19451864-19459384 Theobroma cacao
Thecc1EG003125 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19458385-19459384 Theobroma cacao
Thecc1EG003125 1.0kb downstream 1.0kb downstream 7521 true scaffold_1: 19450864-19458384 Theobroma cacao
Thecc1EG003125 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19450864-19451863 Theobroma cacao
Thecc1EG003125 2.0kb upstream 2.0kb upstream 8521 true scaffold_1: 19451864-19460384 Theobroma cacao
Thecc1EG003125 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19458385-19460384 Theobroma cacao
Thecc1EG003125 2.0kb downstream 2.0kb downstream 8521 true scaffold_1: 19449864-19458384 Theobroma cacao
Thecc1EG003125 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19449864-19451863 Theobroma cacao
Thecc1EG003125 5.0kb upstream 5.0kb upstream 11521 true scaffold_1: 19451864-19463384 Theobroma cacao
Thecc1EG003125 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19458385-19463384 Theobroma cacao
Thecc1EG003125 5.0kb downstream 5.0kb downstream 11521 true scaffold_1: 19446864-19458384 Theobroma cacao
Thecc1EG003125 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19446864-19451863 Theobroma cacao
Thecc1EG003125 10.0kb upstream 10.0kb upstream 16521 true scaffold_1: 19451864-19468384 Theobroma cacao
Thecc1EG003125 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19458385-19468384 Theobroma cacao
Thecc1EG003125 10.0kb downstream 10.0kb downstream 16521 true scaffold_1: 19441864-19458384 Theobroma cacao
Thecc1EG003125 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19441864-19451863 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841496 5264 Brassicales-Malvales View MSA
124350484 5266 SBM View MSA
124252658 5268 Malvidae View MSA
124069526 5270 Rosid View MSA
123737897 5271 Pentapetalae View MSA
122794460 5272 Eudicot View MSA
122048181 5273 Angiosperm View MSA
121348763 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain