Gene : Thecc1EG003082 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2267
Name:  ? Thecc1EG003082 Secondary Identifier:  ? PAC:27436166
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003082 0.5kb upstream 0.5kb upstream 23830 true scaffold_1: 19009422-19033251 Theobroma cacao
Thecc1EG003082 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19009422-19009921 Theobroma cacao
Thecc1EG003082 0.5kb downstream 0.5kb downstream 23830 true scaffold_1: 19009922-19033751 Theobroma cacao
Thecc1EG003082 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19033252-19033751 Theobroma cacao
Thecc1EG003082 1.0kb upstream 1.0kb upstream 24330 true scaffold_1: 19008922-19033251 Theobroma cacao
Thecc1EG003082 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19008922-19009921 Theobroma cacao
Thecc1EG003082 1.0kb downstream 1.0kb downstream 24330 true scaffold_1: 19009922-19034251 Theobroma cacao
Thecc1EG003082 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19033252-19034251 Theobroma cacao
Thecc1EG003082 2.0kb upstream 2.0kb upstream 25330 true scaffold_1: 19007922-19033251 Theobroma cacao
Thecc1EG003082 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19007922-19009921 Theobroma cacao
Thecc1EG003082 2.0kb downstream 2.0kb downstream 25330 true scaffold_1: 19009922-19035251 Theobroma cacao
Thecc1EG003082 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19033252-19035251 Theobroma cacao
Thecc1EG003082 5.0kb upstream 5.0kb upstream 28330 true scaffold_1: 19004922-19033251 Theobroma cacao
Thecc1EG003082 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19004922-19009921 Theobroma cacao
Thecc1EG003082 5.0kb downstream 5.0kb downstream 28330 true scaffold_1: 19009922-19038251 Theobroma cacao
Thecc1EG003082 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19033252-19038251 Theobroma cacao
Thecc1EG003082 10.0kb upstream 10.0kb upstream 33330 true scaffold_1: 18999922-19033251 Theobroma cacao
Thecc1EG003082 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18999922-19009921 Theobroma cacao
Thecc1EG003082 10.0kb downstream 10.0kb downstream 33330 true scaffold_1: 19009922-19043251 Theobroma cacao
Thecc1EG003082 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19033252-19043251 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782018 5273 Angiosperm View MSA
123823847 5264 Brassicales-Malvales View MSA
124319901 5266 SBM View MSA
124168402 5268 Malvidae View MSA
123891799 5270 Rosid View MSA
123751591 5271 Pentapetalae View MSA
122774090 5272 Eudicot View MSA
121053563 5274 Embryophyte View MSA
123093580 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain