Gene : Thecc1EG003993 T. cacao v1.1
Defline:  (1 of 1) K12667 - oligosaccharyltransferase complex subunit delta (ribophorin II) (SWP1, RPN2) Genomic Order:  2539
Name:  ? Thecc1EG003993 Secondary Identifier:  ? PAC:27435680
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003993 0.5kb upstream 0.5kb upstream 10909 true scaffold_1: 28363389-28374297 Theobroma cacao
Thecc1EG003993 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28363389-28363888 Theobroma cacao
Thecc1EG003993 0.5kb downstream 0.5kb downstream 10909 true scaffold_1: 28363889-28374797 Theobroma cacao
Thecc1EG003993 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28374298-28374797 Theobroma cacao
Thecc1EG003993 1.0kb upstream 1.0kb upstream 11409 true scaffold_1: 28362889-28374297 Theobroma cacao
Thecc1EG003993 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28362889-28363888 Theobroma cacao
Thecc1EG003993 1.0kb downstream 1.0kb downstream 11409 true scaffold_1: 28363889-28375297 Theobroma cacao
Thecc1EG003993 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28374298-28375297 Theobroma cacao
Thecc1EG003993 2.0kb upstream 2.0kb upstream 12409 true scaffold_1: 28361889-28374297 Theobroma cacao
Thecc1EG003993 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28361889-28363888 Theobroma cacao
Thecc1EG003993 2.0kb downstream 2.0kb downstream 12409 true scaffold_1: 28363889-28376297 Theobroma cacao
Thecc1EG003993 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28374298-28376297 Theobroma cacao
Thecc1EG003993 5.0kb upstream 5.0kb upstream 15409 true scaffold_1: 28358889-28374297 Theobroma cacao
Thecc1EG003993 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28358889-28363888 Theobroma cacao
Thecc1EG003993 5.0kb downstream 5.0kb downstream 15409 true scaffold_1: 28363889-28379297 Theobroma cacao
Thecc1EG003993 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28374298-28379297 Theobroma cacao
Thecc1EG003993 10.0kb upstream 10.0kb upstream 20409 true scaffold_1: 28353889-28374297 Theobroma cacao
Thecc1EG003993 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28353889-28363888 Theobroma cacao
Thecc1EG003993 10.0kb downstream 10.0kb downstream 20409 true scaffold_1: 28363889-28384297 Theobroma cacao
Thecc1EG003993 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28374298-28384297 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041028 5273 Angiosperm View MSA
123830435 5264 Brassicales-Malvales View MSA
124341410 5266 SBM View MSA
124253073 5268 Malvidae View MSA
124066748 5270 Rosid View MSA
123737285 5271 Pentapetalae View MSA
122787550 5272 Eudicot View MSA
121344151 5274 Embryophyte View MSA
123379986 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain