Gene : Thecc1EG003964 T. cacao v1.1
Defline:  (1 of 1) K01900 - succinyl-CoA synthetase beta subunit (LSC2) Genomic Order:  2518
Name:  ? Thecc1EG003964 Secondary Identifier:  ? PAC:27431385
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003964 0.5kb upstream 0.5kb upstream 4475 true scaffold_1: 28181862-28186336 Theobroma cacao
Thecc1EG003964 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28181862-28182361 Theobroma cacao
Thecc1EG003964 0.5kb downstream 0.5kb downstream 4475 true scaffold_1: 28182362-28186836 Theobroma cacao
Thecc1EG003964 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28186337-28186836 Theobroma cacao
Thecc1EG003964 1.0kb upstream 1.0kb upstream 4975 true scaffold_1: 28181362-28186336 Theobroma cacao
Thecc1EG003964 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28181362-28182361 Theobroma cacao
Thecc1EG003964 1.0kb downstream 1.0kb downstream 4975 true scaffold_1: 28182362-28187336 Theobroma cacao
Thecc1EG003964 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28186337-28187336 Theobroma cacao
Thecc1EG003964 2.0kb upstream 2.0kb upstream 5975 true scaffold_1: 28180362-28186336 Theobroma cacao
Thecc1EG003964 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28180362-28182361 Theobroma cacao
Thecc1EG003964 2.0kb downstream 2.0kb downstream 5975 true scaffold_1: 28182362-28188336 Theobroma cacao
Thecc1EG003964 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28186337-28188336 Theobroma cacao
Thecc1EG003964 5.0kb upstream 5.0kb upstream 8975 true scaffold_1: 28177362-28186336 Theobroma cacao
Thecc1EG003964 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28177362-28182361 Theobroma cacao
Thecc1EG003964 5.0kb downstream 5.0kb downstream 8975 true scaffold_1: 28182362-28191336 Theobroma cacao
Thecc1EG003964 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28186337-28191336 Theobroma cacao
Thecc1EG003964 10.0kb upstream 10.0kb upstream 13975 true scaffold_1: 28172362-28186336 Theobroma cacao
Thecc1EG003964 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28172362-28182361 Theobroma cacao
Thecc1EG003964 10.0kb downstream 10.0kb downstream 13975 true scaffold_1: 28182362-28196336 Theobroma cacao
Thecc1EG003964 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28186337-28196336 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831519 5264 Brassicales-Malvales View MSA
124339342 5266 SBM View MSA
124251399 5268 Malvidae View MSA
124060872 5270 Rosid View MSA
123742087 5271 Pentapetalae View MSA
122792279 5272 Eudicot View MSA
122051444 5273 Angiosperm View MSA
121345383 5274 Embryophyte View MSA
123424499 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain