Gene : Thecc1EG004400 T. cacao v1.1
Defline:  (1 of 1) PTHR10906//PTHR10906:SF2 - SECY/SEC61-ALPHA FAMILY MEMBER // PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC Genomic Order:  2790
Name:  ? Thecc1EG004400 Secondary Identifier:  ? PAC:27431614
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG004400 0.5kb upstream 0.5kb upstream 7871 true scaffold_1: 31394435-31402305 Theobroma cacao
Thecc1EG004400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 31394435-31394934 Theobroma cacao
Thecc1EG004400 0.5kb downstream 0.5kb downstream 7871 true scaffold_1: 31394935-31402805 Theobroma cacao
Thecc1EG004400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 31402306-31402805 Theobroma cacao
Thecc1EG004400 1.0kb upstream 1.0kb upstream 8371 true scaffold_1: 31393935-31402305 Theobroma cacao
Thecc1EG004400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 31393935-31394934 Theobroma cacao
Thecc1EG004400 1.0kb downstream 1.0kb downstream 8371 true scaffold_1: 31394935-31403305 Theobroma cacao
Thecc1EG004400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 31402306-31403305 Theobroma cacao
Thecc1EG004400 2.0kb upstream 2.0kb upstream 9371 true scaffold_1: 31392935-31402305 Theobroma cacao
Thecc1EG004400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 31392935-31394934 Theobroma cacao
Thecc1EG004400 2.0kb downstream 2.0kb downstream 9371 true scaffold_1: 31394935-31404305 Theobroma cacao
Thecc1EG004400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 31402306-31404305 Theobroma cacao
Thecc1EG004400 5.0kb upstream 5.0kb upstream 12371 true scaffold_1: 31389935-31402305 Theobroma cacao
Thecc1EG004400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 31389935-31394934 Theobroma cacao
Thecc1EG004400 5.0kb downstream 5.0kb downstream 12371 true scaffold_1: 31394935-31407305 Theobroma cacao
Thecc1EG004400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 31402306-31407305 Theobroma cacao
Thecc1EG004400 10.0kb upstream 10.0kb upstream 17371 true scaffold_1: 31384935-31402305 Theobroma cacao
Thecc1EG004400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 31384935-31394934 Theobroma cacao
Thecc1EG004400 10.0kb downstream 10.0kb downstream 17371 true scaffold_1: 31394935-31412305 Theobroma cacao
Thecc1EG004400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 31402306-31412305 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833134 5264 Brassicales-Malvales View MSA
124338254 5266 SBM View MSA
124238779 5268 Malvidae View MSA
124061743 5270 Rosid View MSA
123737795 5271 Pentapetalae View MSA
122790325 5272 Eudicot View MSA
122042778 5273 Angiosperm View MSA
121345832 5274 Embryophyte View MSA
123425781 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain