Gene : Thecc1EG005037 T. cacao v1.1
Defline:  (1 of 1) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  3314
Name:  ? Thecc1EG005037 Secondary Identifier:  ? PAC:27435709
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5173 Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PYRUVDEHYD-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005037 0.5kb upstream 0.5kb upstream 4146 true scaffold_1: 34723391-34727536 Theobroma cacao
Thecc1EG005037 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 34727037-34727536 Theobroma cacao
Thecc1EG005037 0.5kb downstream 0.5kb downstream 4146 true scaffold_1: 34722891-34727036 Theobroma cacao
Thecc1EG005037 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 34722891-34723390 Theobroma cacao
Thecc1EG005037 1.0kb upstream 1.0kb upstream 4646 true scaffold_1: 34723391-34728036 Theobroma cacao
Thecc1EG005037 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 34727037-34728036 Theobroma cacao
Thecc1EG005037 1.0kb downstream 1.0kb downstream 4646 true scaffold_1: 34722391-34727036 Theobroma cacao
Thecc1EG005037 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 34722391-34723390 Theobroma cacao
Thecc1EG005037 2.0kb upstream 2.0kb upstream 5646 true scaffold_1: 34723391-34729036 Theobroma cacao
Thecc1EG005037 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 34727037-34729036 Theobroma cacao
Thecc1EG005037 2.0kb downstream 2.0kb downstream 5646 true scaffold_1: 34721391-34727036 Theobroma cacao
Thecc1EG005037 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 34721391-34723390 Theobroma cacao
Thecc1EG005037 5.0kb upstream 5.0kb upstream 8646 true scaffold_1: 34723391-34732036 Theobroma cacao
Thecc1EG005037 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 34727037-34732036 Theobroma cacao
Thecc1EG005037 5.0kb downstream 5.0kb downstream 8646 true scaffold_1: 34718391-34727036 Theobroma cacao
Thecc1EG005037 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 34718391-34723390 Theobroma cacao
Thecc1EG005037 10.0kb upstream 10.0kb upstream 13646 true scaffold_1: 34723391-34737036 Theobroma cacao
Thecc1EG005037 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 34727037-34737036 Theobroma cacao
Thecc1EG005037 10.0kb downstream 10.0kb downstream 13646 true scaffold_1: 34713391-34727036 Theobroma cacao
Thecc1EG005037 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 34713391-34723390 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835447 5264 Brassicales-Malvales View MSA
124343284 5266 SBM View MSA
124241416 5268 Malvidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain