Gene : Thecc1EG005636 T. cacao v1.1
Defline:  (1 of 1) PTHR23163//PTHR23163:SF3 - RING FINGER PROTEIN-RELATED // E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  3836
Name:  ? Thecc1EG005636 Secondary Identifier:  ? PAC:27432218
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005636 0.5kb upstream 0.5kb upstream 10115 true scaffold_1: 37580836-37590950 Theobroma cacao
Thecc1EG005636 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 37580836-37581335 Theobroma cacao
Thecc1EG005636 0.5kb downstream 0.5kb downstream 10115 true scaffold_1: 37581336-37591450 Theobroma cacao
Thecc1EG005636 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 37590951-37591450 Theobroma cacao
Thecc1EG005636 1.0kb upstream 1.0kb upstream 10615 true scaffold_1: 37580336-37590950 Theobroma cacao
Thecc1EG005636 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 37580336-37581335 Theobroma cacao
Thecc1EG005636 1.0kb downstream 1.0kb downstream 10615 true scaffold_1: 37581336-37591950 Theobroma cacao
Thecc1EG005636 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 37590951-37591950 Theobroma cacao
Thecc1EG005636 2.0kb upstream 2.0kb upstream 11615 true scaffold_1: 37579336-37590950 Theobroma cacao
Thecc1EG005636 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 37579336-37581335 Theobroma cacao
Thecc1EG005636 2.0kb downstream 2.0kb downstream 11615 true scaffold_1: 37581336-37592950 Theobroma cacao
Thecc1EG005636 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 37590951-37592950 Theobroma cacao
Thecc1EG005636 5.0kb upstream 5.0kb upstream 14615 true scaffold_1: 37576336-37590950 Theobroma cacao
Thecc1EG005636 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 37576336-37581335 Theobroma cacao
Thecc1EG005636 5.0kb downstream 5.0kb downstream 14615 true scaffold_1: 37581336-37595950 Theobroma cacao
Thecc1EG005636 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 37590951-37595950 Theobroma cacao
Thecc1EG005636 10.0kb upstream 10.0kb upstream 19615 true scaffold_1: 37571336-37590950 Theobroma cacao
Thecc1EG005636 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 37571336-37581335 Theobroma cacao
Thecc1EG005636 10.0kb downstream 10.0kb downstream 19615 true scaffold_1: 37581336-37600950 Theobroma cacao
Thecc1EG005636 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 37590951-37600950 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841035 5264 Brassicales-Malvales View MSA
124344060 5266 SBM View MSA
124251962 5268 Malvidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain