Gene : Thecc1EG005873 T. cacao v1.1
Defline:  (1 of 1) PTHR31375//PTHR31375:SF28 - FAMILY NOT NAMED // POLYGALACTURONASE QRT2 Genomic Order:  4048
Name:  ? Thecc1EG005873 Secondary Identifier:  ? PAC:27434359
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005873 0.5kb upstream 0.5kb upstream 8252 true scaffold_1: 38613430-38621681 Theobroma cacao
Thecc1EG005873 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38621182-38621681 Theobroma cacao
Thecc1EG005873 0.5kb downstream 0.5kb downstream 8252 true scaffold_1: 38612930-38621181 Theobroma cacao
Thecc1EG005873 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38612930-38613429 Theobroma cacao
Thecc1EG005873 1.0kb upstream 1.0kb upstream 8752 true scaffold_1: 38613430-38622181 Theobroma cacao
Thecc1EG005873 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38621182-38622181 Theobroma cacao
Thecc1EG005873 1.0kb downstream 1.0kb downstream 8752 true scaffold_1: 38612430-38621181 Theobroma cacao
Thecc1EG005873 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38612430-38613429 Theobroma cacao
Thecc1EG005873 2.0kb upstream 2.0kb upstream 9752 true scaffold_1: 38613430-38623181 Theobroma cacao
Thecc1EG005873 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38621182-38623181 Theobroma cacao
Thecc1EG005873 2.0kb downstream 2.0kb downstream 9752 true scaffold_1: 38611430-38621181 Theobroma cacao
Thecc1EG005873 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38611430-38613429 Theobroma cacao
Thecc1EG005873 5.0kb upstream 5.0kb upstream 12752 true scaffold_1: 38613430-38626181 Theobroma cacao
Thecc1EG005873 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38621182-38626181 Theobroma cacao
Thecc1EG005873 5.0kb downstream 5.0kb downstream 12752 true scaffold_1: 38608430-38621181 Theobroma cacao
Thecc1EG005873 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38608430-38613429 Theobroma cacao
Thecc1EG005873 10.0kb upstream 10.0kb upstream 17752 true scaffold_1: 38613430-38631181 Theobroma cacao
Thecc1EG005873 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38621182-38631181 Theobroma cacao
Thecc1EG005873 10.0kb downstream 10.0kb downstream 17752 true scaffold_1: 38603430-38621181 Theobroma cacao
Thecc1EG005873 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38603430-38613429 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839826 5264 Brassicales-Malvales View MSA
124338536 5266 SBM View MSA
124237828 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain