Gene : Thecc1EG005868 T. cacao v1.1
Defline:  (1 of 2) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  4043
Name:  ? Thecc1EG005868 Secondary Identifier:  ? PAC:27433649
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005868 0.5kb upstream 0.5kb upstream 946 true scaffold_1: 38598978-38599923 Theobroma cacao
Thecc1EG005868 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38598978-38599477 Theobroma cacao
Thecc1EG005868 0.5kb downstream 0.5kb downstream 946 true scaffold_1: 38599478-38600423 Theobroma cacao
Thecc1EG005868 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38599924-38600423 Theobroma cacao
Thecc1EG005868 1.0kb upstream 1.0kb upstream 1446 true scaffold_1: 38598478-38599923 Theobroma cacao
Thecc1EG005868 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38598478-38599477 Theobroma cacao
Thecc1EG005868 1.0kb downstream 1.0kb downstream 1446 true scaffold_1: 38599478-38600923 Theobroma cacao
Thecc1EG005868 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38599924-38600923 Theobroma cacao
Thecc1EG005868 2.0kb upstream 2.0kb upstream 2446 true scaffold_1: 38597478-38599923 Theobroma cacao
Thecc1EG005868 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38597478-38599477 Theobroma cacao
Thecc1EG005868 2.0kb downstream 2.0kb downstream 2446 true scaffold_1: 38599478-38601923 Theobroma cacao
Thecc1EG005868 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38599924-38601923 Theobroma cacao
Thecc1EG005868 5.0kb upstream 5.0kb upstream 5446 true scaffold_1: 38594478-38599923 Theobroma cacao
Thecc1EG005868 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38594478-38599477 Theobroma cacao
Thecc1EG005868 5.0kb downstream 5.0kb downstream 5446 true scaffold_1: 38599478-38604923 Theobroma cacao
Thecc1EG005868 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38599924-38604923 Theobroma cacao
Thecc1EG005868 10.0kb upstream 10.0kb upstream 10446 true scaffold_1: 38589478-38599923 Theobroma cacao
Thecc1EG005868 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38589478-38599477 Theobroma cacao
Thecc1EG005868 10.0kb downstream 10.0kb downstream 10446 true scaffold_1: 38599478-38609923 Theobroma cacao
Thecc1EG005868 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38599924-38609923 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840325 5264 Brassicales-Malvales View MSA
124349006 5266 SBM View MSA
124249733 5268 Malvidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain