Gene : Thecc1EG005864 T. cacao v1.1
Defline:  (1 of 1) K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) Genomic Order:  4039
Name:  ? Thecc1EG005864 Secondary Identifier:  ? PAC:27436702
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005864 0.5kb upstream 0.5kb upstream 2328 true scaffold_1: 38581897-38584224 Theobroma cacao
Thecc1EG005864 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38583725-38584224 Theobroma cacao
Thecc1EG005864 0.5kb downstream 0.5kb downstream 2328 true scaffold_1: 38581397-38583724 Theobroma cacao
Thecc1EG005864 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38581397-38581896 Theobroma cacao
Thecc1EG005864 1.0kb upstream 1.0kb upstream 2828 true scaffold_1: 38581897-38584724 Theobroma cacao
Thecc1EG005864 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38583725-38584724 Theobroma cacao
Thecc1EG005864 1.0kb downstream 1.0kb downstream 2828 true scaffold_1: 38580897-38583724 Theobroma cacao
Thecc1EG005864 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38580897-38581896 Theobroma cacao
Thecc1EG005864 2.0kb upstream 2.0kb upstream 3828 true scaffold_1: 38581897-38585724 Theobroma cacao
Thecc1EG005864 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38583725-38585724 Theobroma cacao
Thecc1EG005864 2.0kb downstream 2.0kb downstream 3828 true scaffold_1: 38579897-38583724 Theobroma cacao
Thecc1EG005864 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38579897-38581896 Theobroma cacao
Thecc1EG005864 5.0kb upstream 5.0kb upstream 6828 true scaffold_1: 38581897-38588724 Theobroma cacao
Thecc1EG005864 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38583725-38588724 Theobroma cacao
Thecc1EG005864 5.0kb downstream 5.0kb downstream 6828 true scaffold_1: 38576897-38583724 Theobroma cacao
Thecc1EG005864 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38576897-38581896 Theobroma cacao
Thecc1EG005864 10.0kb upstream 10.0kb upstream 11828 true scaffold_1: 38581897-38593724 Theobroma cacao
Thecc1EG005864 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38583725-38593724 Theobroma cacao
Thecc1EG005864 10.0kb downstream 10.0kb downstream 11828 true scaffold_1: 38571897-38583724 Theobroma cacao
Thecc1EG005864 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38571897-38581896 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123815308 5264 Brassicales-Malvales Singleton cluster - no MSA
124311743 5266 SBM Singleton cluster - no MSA
124249264 5268 Malvidae View MSA
124064272 5270 Rosid View MSA
123749269 5271 Pentapetalae View MSA
122790811 5272 Eudicot View MSA
122043921 5273 Angiosperm View MSA
121349469 5274 Embryophyte View MSA
123424853 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain