Gene : Thecc1EG005842 T. cacao v1.1
Defline:  (1 of 4) PTHR10366//PTHR10366:SF332 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // SUBFAMILY NOT NAMED Genomic Order:  4017
Name:  ? Thecc1EG005842 Secondary Identifier:  ? PAC:27432011
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-361 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005842 0.5kb upstream 0.5kb upstream 5259 true scaffold_1: 38455160-38460418 Theobroma cacao
Thecc1EG005842 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38455160-38455659 Theobroma cacao
Thecc1EG005842 0.5kb downstream 0.5kb downstream 5259 true scaffold_1: 38455660-38460918 Theobroma cacao
Thecc1EG005842 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38460419-38460918 Theobroma cacao
Thecc1EG005842 1.0kb upstream 1.0kb upstream 5759 true scaffold_1: 38454660-38460418 Theobroma cacao
Thecc1EG005842 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38454660-38455659 Theobroma cacao
Thecc1EG005842 1.0kb downstream 1.0kb downstream 5759 true scaffold_1: 38455660-38461418 Theobroma cacao
Thecc1EG005842 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38460419-38461418 Theobroma cacao
Thecc1EG005842 2.0kb upstream 2.0kb upstream 6759 true scaffold_1: 38453660-38460418 Theobroma cacao
Thecc1EG005842 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38453660-38455659 Theobroma cacao
Thecc1EG005842 2.0kb downstream 2.0kb downstream 6759 true scaffold_1: 38455660-38462418 Theobroma cacao
Thecc1EG005842 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38460419-38462418 Theobroma cacao
Thecc1EG005842 5.0kb upstream 5.0kb upstream 9759 true scaffold_1: 38450660-38460418 Theobroma cacao
Thecc1EG005842 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38450660-38455659 Theobroma cacao
Thecc1EG005842 5.0kb downstream 5.0kb downstream 9759 true scaffold_1: 38455660-38465418 Theobroma cacao
Thecc1EG005842 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38460419-38465418 Theobroma cacao
Thecc1EG005842 10.0kb upstream 10.0kb upstream 14759 true scaffold_1: 38445660-38460418 Theobroma cacao
Thecc1EG005842 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38445660-38455659 Theobroma cacao
Thecc1EG005842 10.0kb downstream 10.0kb downstream 14759 true scaffold_1: 38455660-38470418 Theobroma cacao
Thecc1EG005842 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38460419-38470418 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041043 5273 Angiosperm View MSA
123816087 5264 Brassicales-Malvales Singleton cluster - no MSA
124312493 5266 SBM Singleton cluster - no MSA
124255305 5268 Malvidae View MSA
124063767 5270 Rosid View MSA
123748181 5271 Pentapetalae View MSA
122792644 5272 Eudicot View MSA
121350507 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain