Gene : Thecc1EG005948 T. cacao v1.1
Defline:  (1 of 1) PTHR11739:SF8 - CITRATE SYNTHASE, MITOCHONDRIAL Genomic Order:  4113
Name:  ? Thecc1EG005948 Secondary Identifier:  ? PAC:27431995
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLYOXYLATE-BYPASS Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-561 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  
Tcacao PWY-6549 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005948 0.5kb upstream 0.5kb upstream 8187 true scaffold_1: 38937327-38945513 Theobroma cacao
Thecc1EG005948 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38945014-38945513 Theobroma cacao
Thecc1EG005948 0.5kb downstream 0.5kb downstream 8187 true scaffold_1: 38936827-38945013 Theobroma cacao
Thecc1EG005948 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38936827-38937326 Theobroma cacao
Thecc1EG005948 1.0kb upstream 1.0kb upstream 8687 true scaffold_1: 38937327-38946013 Theobroma cacao
Thecc1EG005948 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38945014-38946013 Theobroma cacao
Thecc1EG005948 1.0kb downstream 1.0kb downstream 8687 true scaffold_1: 38936327-38945013 Theobroma cacao
Thecc1EG005948 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38936327-38937326 Theobroma cacao
Thecc1EG005948 2.0kb upstream 2.0kb upstream 9687 true scaffold_1: 38937327-38947013 Theobroma cacao
Thecc1EG005948 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38945014-38947013 Theobroma cacao
Thecc1EG005948 2.0kb downstream 2.0kb downstream 9687 true scaffold_1: 38935327-38945013 Theobroma cacao
Thecc1EG005948 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38935327-38937326 Theobroma cacao
Thecc1EG005948 5.0kb upstream 5.0kb upstream 12687 true scaffold_1: 38937327-38950013 Theobroma cacao
Thecc1EG005948 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38945014-38950013 Theobroma cacao
Thecc1EG005948 5.0kb downstream 5.0kb downstream 12687 true scaffold_1: 38932327-38945013 Theobroma cacao
Thecc1EG005948 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38932327-38937326 Theobroma cacao
Thecc1EG005948 10.0kb upstream 10.0kb upstream 17687 true scaffold_1: 38937327-38955013 Theobroma cacao
Thecc1EG005948 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38945014-38955013 Theobroma cacao
Thecc1EG005948 10.0kb downstream 10.0kb downstream 17687 true scaffold_1: 38927327-38945013 Theobroma cacao
Thecc1EG005948 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38927327-38937326 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041314 5273 Angiosperm View MSA
123832003 5264 Brassicales-Malvales View MSA
124343675 5266 SBM View MSA
124250397 5268 Malvidae View MSA
124068700 5270 Rosid View MSA
123737684 5271 Pentapetalae View MSA
122792616 5272 Eudicot View MSA
121345226 5274 Embryophyte View MSA
123424186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain