Gene : Thecc1EG042428 T. cacao v1.1
Defline:  (1 of 1) PTHR11709:SF22 - LACCASE-12-RELATED Genomic Order:  89
Name:  ? Thecc1EG042428 Secondary Identifier:  ? PAC:27443446
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5466 Theobroma cacao pathologic  
Tcacao PWY-6824 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG042428 0.5kb upstream 0.5kb upstream 4005 true scaffold_10r: 483593-487597 Theobroma cacao
Thecc1EG042428 0.5kb upstream 0.5kb upstream 500 false scaffold_10r: 483593-484092 Theobroma cacao
Thecc1EG042428 0.5kb downstream 0.5kb downstream 4005 true scaffold_10r: 484093-488097 Theobroma cacao
Thecc1EG042428 0.5kb downstream 0.5kb downstream 500 false scaffold_10r: 487598-488097 Theobroma cacao
Thecc1EG042428 1.0kb upstream 1.0kb upstream 4505 true scaffold_10r: 483093-487597 Theobroma cacao
Thecc1EG042428 1.0kb upstream 1.0kb upstream 1000 false scaffold_10r: 483093-484092 Theobroma cacao
Thecc1EG042428 1.0kb downstream 1.0kb downstream 4505 true scaffold_10r: 484093-488597 Theobroma cacao
Thecc1EG042428 1.0kb downstream 1.0kb downstream 1000 false scaffold_10r: 487598-488597 Theobroma cacao
Thecc1EG042428 2.0kb upstream 2.0kb upstream 5505 true scaffold_10r: 482093-487597 Theobroma cacao
Thecc1EG042428 2.0kb upstream 2.0kb upstream 2000 false scaffold_10r: 482093-484092 Theobroma cacao
Thecc1EG042428 2.0kb downstream 2.0kb downstream 5505 true scaffold_10r: 484093-489597 Theobroma cacao
Thecc1EG042428 2.0kb downstream 2.0kb downstream 2000 false scaffold_10r: 487598-489597 Theobroma cacao
Thecc1EG042428 5.0kb upstream 5.0kb upstream 8505 true scaffold_10r: 479093-487597 Theobroma cacao
Thecc1EG042428 5.0kb upstream 5.0kb upstream 5000 false scaffold_10r: 479093-484092 Theobroma cacao
Thecc1EG042428 5.0kb downstream 5.0kb downstream 8505 true scaffold_10r: 484093-492597 Theobroma cacao
Thecc1EG042428 5.0kb downstream 5.0kb downstream 5000 false scaffold_10r: 487598-492597 Theobroma cacao
Thecc1EG042428 10.0kb upstream 10.0kb upstream 13505 true scaffold_10r: 474093-487597 Theobroma cacao
Thecc1EG042428 10.0kb upstream 10.0kb upstream 10000 false scaffold_10r: 474093-484092 Theobroma cacao
Thecc1EG042428 10.0kb downstream 10.0kb downstream 13505 true scaffold_10r: 484093-497597 Theobroma cacao
Thecc1EG042428 10.0kb downstream 10.0kb downstream 10000 false scaffold_10r: 487598-497597 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837056 5264 Brassicales-Malvales View MSA
124338843 5266 SBM View MSA
124253319 5268 Malvidae View MSA
124063263 5270 Rosid View MSA
123746086 5271 Pentapetalae View MSA
122788360 5272 Eudicot View MSA
122044394 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain