Gene : Thecc1EG042811 T. cacao v1.1
Defline:  (1 of 1) PTHR11946//PTHR11946:SF89 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONYL-TRNA SYNTHETASE Genomic Order:  435
Name:  ? Thecc1EG042811 Secondary Identifier:  ? PAC:27442848
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG042811 0.5kb upstream 0.5kb upstream 6428 true scaffold_10r: 2360138-2366565 Theobroma cacao
Thecc1EG042811 0.5kb upstream 0.5kb upstream 500 false scaffold_10r: 2366066-2366565 Theobroma cacao
Thecc1EG042811 0.5kb downstream 0.5kb downstream 6428 true scaffold_10r: 2359638-2366065 Theobroma cacao
Thecc1EG042811 0.5kb downstream 0.5kb downstream 500 false scaffold_10r: 2359638-2360137 Theobroma cacao
Thecc1EG042811 1.0kb upstream 1.0kb upstream 6928 true scaffold_10r: 2360138-2367065 Theobroma cacao
Thecc1EG042811 1.0kb upstream 1.0kb upstream 1000 false scaffold_10r: 2366066-2367065 Theobroma cacao
Thecc1EG042811 1.0kb downstream 1.0kb downstream 6928 true scaffold_10r: 2359138-2366065 Theobroma cacao
Thecc1EG042811 1.0kb downstream 1.0kb downstream 1000 false scaffold_10r: 2359138-2360137 Theobroma cacao
Thecc1EG042811 2.0kb upstream 2.0kb upstream 7928 true scaffold_10r: 2360138-2368065 Theobroma cacao
Thecc1EG042811 2.0kb upstream 2.0kb upstream 2000 false scaffold_10r: 2366066-2368065 Theobroma cacao
Thecc1EG042811 2.0kb downstream 2.0kb downstream 7928 true scaffold_10r: 2358138-2366065 Theobroma cacao
Thecc1EG042811 2.0kb downstream 2.0kb downstream 2000 false scaffold_10r: 2358138-2360137 Theobroma cacao
Thecc1EG042811 5.0kb upstream 5.0kb upstream 10928 true scaffold_10r: 2360138-2371065 Theobroma cacao
Thecc1EG042811 5.0kb upstream 5.0kb upstream 5000 false scaffold_10r: 2366066-2371065 Theobroma cacao
Thecc1EG042811 5.0kb downstream 5.0kb downstream 10928 true scaffold_10r: 2355138-2366065 Theobroma cacao
Thecc1EG042811 5.0kb downstream 5.0kb downstream 5000 false scaffold_10r: 2355138-2360137 Theobroma cacao
Thecc1EG042811 10.0kb upstream 10.0kb upstream 15928 true scaffold_10r: 2360138-2376065 Theobroma cacao
Thecc1EG042811 10.0kb upstream 10.0kb upstream 10000 false scaffold_10r: 2366066-2376065 Theobroma cacao
Thecc1EG042811 10.0kb downstream 10.0kb downstream 15928 true scaffold_10r: 2350138-2366065 Theobroma cacao
Thecc1EG042811 10.0kb downstream 10.0kb downstream 10000 false scaffold_10r: 2350138-2360137 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831392 5264 Brassicales-Malvales View MSA
124342754 5266 SBM View MSA
124242853 5268 Malvidae View MSA
124065458 5270 Rosid View MSA
123752968 5271 Pentapetalae View MSA
122787831 5272 Eudicot View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain