Gene : Thecc1EG044725 T. cacao v1.1
Defline:  (1 of 1) PF07727//PF13912 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // C2H2-type zinc finger (zf-C2H2_6) Genomic Order:  1372
Name:  ? Thecc1EG044725 Secondary Identifier:  ? PAC:27441611
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG044725 0.5kb upstream 0.5kb upstream 20528 true scaffold_10r: 18978446-18998973 Theobroma cacao
Thecc1EG044725 0.5kb upstream 0.5kb upstream 500 false scaffold_10r: 18998474-18998973 Theobroma cacao
Thecc1EG044725 0.5kb downstream 0.5kb downstream 20528 true scaffold_10r: 18977946-18998473 Theobroma cacao
Thecc1EG044725 0.5kb downstream 0.5kb downstream 500 false scaffold_10r: 18977946-18978445 Theobroma cacao
Thecc1EG044725 1.0kb upstream 1.0kb upstream 21028 true scaffold_10r: 18978446-18999473 Theobroma cacao
Thecc1EG044725 1.0kb upstream 1.0kb upstream 1000 false scaffold_10r: 18998474-18999473 Theobroma cacao
Thecc1EG044725 1.0kb downstream 1.0kb downstream 21028 true scaffold_10r: 18977446-18998473 Theobroma cacao
Thecc1EG044725 1.0kb downstream 1.0kb downstream 1000 false scaffold_10r: 18977446-18978445 Theobroma cacao
Thecc1EG044725 2.0kb upstream 2.0kb upstream 22028 true scaffold_10r: 18978446-19000473 Theobroma cacao
Thecc1EG044725 2.0kb upstream 2.0kb upstream 2000 false scaffold_10r: 18998474-19000473 Theobroma cacao
Thecc1EG044725 2.0kb downstream 2.0kb downstream 22028 true scaffold_10r: 18976446-18998473 Theobroma cacao
Thecc1EG044725 2.0kb downstream 2.0kb downstream 2000 false scaffold_10r: 18976446-18978445 Theobroma cacao
Thecc1EG044725 5.0kb upstream 5.0kb upstream 25028 true scaffold_10r: 18978446-19003473 Theobroma cacao
Thecc1EG044725 5.0kb upstream 5.0kb upstream 5000 false scaffold_10r: 18998474-19003473 Theobroma cacao
Thecc1EG044725 5.0kb downstream 5.0kb downstream 25028 true scaffold_10r: 18973446-18998473 Theobroma cacao
Thecc1EG044725 5.0kb downstream 5.0kb downstream 5000 false scaffold_10r: 18973446-18978445 Theobroma cacao
Thecc1EG044725 10.0kb upstream 10.0kb upstream 30028 true scaffold_10r: 18978446-19008473 Theobroma cacao
Thecc1EG044725 10.0kb upstream 10.0kb upstream 10000 false scaffold_10r: 18998474-19008473 Theobroma cacao
Thecc1EG044725 10.0kb downstream 10.0kb downstream 30028 true scaffold_10r: 18968446-18998473 Theobroma cacao
Thecc1EG044725 10.0kb downstream 10.0kb downstream 10000 false scaffold_10r: 18968446-18978445 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123816286 5264 Brassicales-Malvales Singleton cluster - no MSA
124348208 5266 SBM View MSA
124254639 5268 Malvidae View MSA
124071436 5270 Rosid View MSA
123750865 5271 Pentapetalae View MSA
122773852 5272 Eudicot View MSA
122051006 5273 Angiosperm View MSA
121350581 5274 Embryophyte View MSA
123381808 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain