Gene : Thecc1EG045867 T. cacao v1.1
Defline:  (1 of 1) PF01011//PF13360//PF14223 - PQQ enzyme repeat (PQQ) // PQQ-like domain (PQQ_2) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  10
Name:  ? Thecc1EG045867 Secondary Identifier:  ? PAC:27441177
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6464 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG045867 0.5kb upstream 0.5kb upstream 19552 true scaffold_12: 795387-814938 Theobroma cacao
Thecc1EG045867 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 814439-814938 Theobroma cacao
Thecc1EG045867 0.5kb downstream 0.5kb downstream 19552 true scaffold_12: 794887-814438 Theobroma cacao
Thecc1EG045867 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 794887-795386 Theobroma cacao
Thecc1EG045867 1.0kb upstream 1.0kb upstream 20052 true scaffold_12: 795387-815438 Theobroma cacao
Thecc1EG045867 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 814439-815438 Theobroma cacao
Thecc1EG045867 1.0kb downstream 1.0kb downstream 20052 true scaffold_12: 794387-814438 Theobroma cacao
Thecc1EG045867 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 794387-795386 Theobroma cacao
Thecc1EG045867 2.0kb upstream 2.0kb upstream 21052 true scaffold_12: 795387-816438 Theobroma cacao
Thecc1EG045867 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 814439-816438 Theobroma cacao
Thecc1EG045867 2.0kb downstream 2.0kb downstream 21052 true scaffold_12: 793387-814438 Theobroma cacao
Thecc1EG045867 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 793387-795386 Theobroma cacao
Thecc1EG045867 5.0kb upstream 5.0kb upstream 24052 true scaffold_12: 795387-819438 Theobroma cacao
Thecc1EG045867 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 814439-819438 Theobroma cacao
Thecc1EG045867 5.0kb downstream 5.0kb downstream 24052 true scaffold_12: 790387-814438 Theobroma cacao
Thecc1EG045867 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 790387-795386 Theobroma cacao
Thecc1EG045867 10.0kb upstream 10.0kb upstream 29052 true scaffold_12: 795387-824438 Theobroma cacao
Thecc1EG045867 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 814439-824438 Theobroma cacao
Thecc1EG045867 10.0kb downstream 10.0kb downstream 29052 true scaffold_12: 785387-814438 Theobroma cacao
Thecc1EG045867 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 785387-795386 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792221 5273 Angiosperm View MSA
123816837 5264 Brassicales-Malvales Singleton cluster - no MSA
124313218 5266 SBM Singleton cluster - no MSA
124162333 5268 Malvidae Singleton cluster - no MSA
124071700 5270 Rosid View MSA
123753626 5271 Pentapetalae View MSA
122797018 5272 Eudicot View MSA
121349158 5274 Embryophyte View MSA
123425868 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain