Gene : Thecc1EG006511 T. cacao v1.1
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  477
Name:  ? Thecc1EG006511 Secondary Identifier:  ? PAC:27462840
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG006511 0.5kb upstream 0.5kb upstream 8685 true scaffold_2: 2536767-2545451 Theobroma cacao
Thecc1EG006511 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2544952-2545451 Theobroma cacao
Thecc1EG006511 0.5kb downstream 0.5kb downstream 8685 true scaffold_2: 2536267-2544951 Theobroma cacao
Thecc1EG006511 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2536267-2536766 Theobroma cacao
Thecc1EG006511 1.0kb upstream 1.0kb upstream 9185 true scaffold_2: 2536767-2545951 Theobroma cacao
Thecc1EG006511 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2544952-2545951 Theobroma cacao
Thecc1EG006511 1.0kb downstream 1.0kb downstream 9185 true scaffold_2: 2535767-2544951 Theobroma cacao
Thecc1EG006511 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2535767-2536766 Theobroma cacao
Thecc1EG006511 2.0kb upstream 2.0kb upstream 10185 true scaffold_2: 2536767-2546951 Theobroma cacao
Thecc1EG006511 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2544952-2546951 Theobroma cacao
Thecc1EG006511 2.0kb downstream 2.0kb downstream 10185 true scaffold_2: 2534767-2544951 Theobroma cacao
Thecc1EG006511 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2534767-2536766 Theobroma cacao
Thecc1EG006511 5.0kb upstream 5.0kb upstream 13185 true scaffold_2: 2536767-2549951 Theobroma cacao
Thecc1EG006511 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2544952-2549951 Theobroma cacao
Thecc1EG006511 5.0kb downstream 5.0kb downstream 13185 true scaffold_2: 2531767-2544951 Theobroma cacao
Thecc1EG006511 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2531767-2536766 Theobroma cacao
Thecc1EG006511 10.0kb upstream 10.0kb upstream 18185 true scaffold_2: 2536767-2554951 Theobroma cacao
Thecc1EG006511 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2544952-2554951 Theobroma cacao
Thecc1EG006511 10.0kb downstream 10.0kb downstream 18185 true scaffold_2: 2526767-2544951 Theobroma cacao
Thecc1EG006511 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2526767-2536766 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829787 5264 Brassicales-Malvales View MSA
124345364 5266 SBM View MSA
124242500 5268 Malvidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain