Gene : Thecc1EG006633 T. cacao v1.1
Defline:  (1 of 1) PTHR11254//PTHR11254:SF73 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE // E3 UBIQUITIN-PROTEIN LIGASE TRIP12 Genomic Order:  585
Name:  ? Thecc1EG006633 Secondary Identifier:  ? PAC:27464563
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG006633 0.5kb upstream 0.5kb upstream 11389 true scaffold_2: 3032910-3044298 Theobroma cacao
Thecc1EG006633 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3043799-3044298 Theobroma cacao
Thecc1EG006633 0.5kb downstream 0.5kb downstream 11389 true scaffold_2: 3032410-3043798 Theobroma cacao
Thecc1EG006633 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3032410-3032909 Theobroma cacao
Thecc1EG006633 1.0kb upstream 1.0kb upstream 11889 true scaffold_2: 3032910-3044798 Theobroma cacao
Thecc1EG006633 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3043799-3044798 Theobroma cacao
Thecc1EG006633 1.0kb downstream 1.0kb downstream 11889 true scaffold_2: 3031910-3043798 Theobroma cacao
Thecc1EG006633 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3031910-3032909 Theobroma cacao
Thecc1EG006633 2.0kb upstream 2.0kb upstream 12889 true scaffold_2: 3032910-3045798 Theobroma cacao
Thecc1EG006633 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3043799-3045798 Theobroma cacao
Thecc1EG006633 2.0kb downstream 2.0kb downstream 12889 true scaffold_2: 3030910-3043798 Theobroma cacao
Thecc1EG006633 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3030910-3032909 Theobroma cacao
Thecc1EG006633 5.0kb upstream 5.0kb upstream 15889 true scaffold_2: 3032910-3048798 Theobroma cacao
Thecc1EG006633 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3043799-3048798 Theobroma cacao
Thecc1EG006633 5.0kb downstream 5.0kb downstream 15889 true scaffold_2: 3027910-3043798 Theobroma cacao
Thecc1EG006633 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3027910-3032909 Theobroma cacao
Thecc1EG006633 10.0kb upstream 10.0kb upstream 20889 true scaffold_2: 3032910-3053798 Theobroma cacao
Thecc1EG006633 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3043799-3053798 Theobroma cacao
Thecc1EG006633 10.0kb downstream 10.0kb downstream 20889 true scaffold_2: 3022910-3043798 Theobroma cacao
Thecc1EG006633 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3022910-3032909 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839219 5264 Brassicales-Malvales View MSA
124342821 5266 SBM View MSA
124237502 5268 Malvidae View MSA
124064467 5270 Rosid View MSA
123740088 5271 Pentapetalae View MSA
122794553 5272 Eudicot View MSA
122042659 5273 Angiosperm View MSA
121345958 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain