Gene : Thecc1EG006856 T. cacao v1.1
Defline:  (1 of 1) PTHR22572:SF111 - GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC-RELATED Genomic Order:  785
Name:  ? Thecc1EG006856 Secondary Identifier:  ? PAC:27460377
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLYCOGENSYNTH-PWY Theobroma cacao pathologic  
Tcacao PWY-622 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG006856 0.5kb upstream 0.5kb upstream 5577 true scaffold_2: 4146108-4151684 Theobroma cacao
Thecc1EG006856 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 4146108-4146607 Theobroma cacao
Thecc1EG006856 0.5kb downstream 0.5kb downstream 5577 true scaffold_2: 4146608-4152184 Theobroma cacao
Thecc1EG006856 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 4151685-4152184 Theobroma cacao
Thecc1EG006856 1.0kb upstream 1.0kb upstream 6077 true scaffold_2: 4145608-4151684 Theobroma cacao
Thecc1EG006856 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 4145608-4146607 Theobroma cacao
Thecc1EG006856 1.0kb downstream 1.0kb downstream 6077 true scaffold_2: 4146608-4152684 Theobroma cacao
Thecc1EG006856 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 4151685-4152684 Theobroma cacao
Thecc1EG006856 2.0kb upstream 2.0kb upstream 7077 true scaffold_2: 4144608-4151684 Theobroma cacao
Thecc1EG006856 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 4144608-4146607 Theobroma cacao
Thecc1EG006856 2.0kb downstream 2.0kb downstream 7077 true scaffold_2: 4146608-4153684 Theobroma cacao
Thecc1EG006856 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 4151685-4153684 Theobroma cacao
Thecc1EG006856 5.0kb upstream 5.0kb upstream 10077 true scaffold_2: 4141608-4151684 Theobroma cacao
Thecc1EG006856 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 4141608-4146607 Theobroma cacao
Thecc1EG006856 5.0kb downstream 5.0kb downstream 10077 true scaffold_2: 4146608-4156684 Theobroma cacao
Thecc1EG006856 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 4151685-4156684 Theobroma cacao
Thecc1EG006856 10.0kb upstream 10.0kb upstream 15077 true scaffold_2: 4136608-4151684 Theobroma cacao
Thecc1EG006856 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 4136608-4146607 Theobroma cacao
Thecc1EG006856 10.0kb downstream 10.0kb downstream 15077 true scaffold_2: 4146608-4161684 Theobroma cacao
Thecc1EG006856 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 4151685-4161684 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840565 5264 Brassicales-Malvales View MSA
124339293 5266 SBM View MSA
124254381 5268 Malvidae View MSA
124063067 5270 Rosid View MSA
123736648 5271 Pentapetalae View MSA
122795851 5272 Eudicot View MSA
122049948 5273 Angiosperm View MSA
121348030 5274 Embryophyte View MSA
123424085 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain