Gene : Thecc1EG007348 T. cacao v1.1
Defline:  (1 of 3) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Genomic Order:  1219
Name:  ? Thecc1EG007348 Secondary Identifier:  ? PAC:27464983
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao VALDEG-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG007348 0.5kb upstream 0.5kb upstream 11745 true scaffold_2: 6555321-6567065 Theobroma cacao
Thecc1EG007348 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 6555321-6555820 Theobroma cacao
Thecc1EG007348 0.5kb downstream 0.5kb downstream 11745 true scaffold_2: 6555821-6567565 Theobroma cacao
Thecc1EG007348 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 6567066-6567565 Theobroma cacao
Thecc1EG007348 1.0kb upstream 1.0kb upstream 12245 true scaffold_2: 6554821-6567065 Theobroma cacao
Thecc1EG007348 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 6554821-6555820 Theobroma cacao
Thecc1EG007348 1.0kb downstream 1.0kb downstream 12245 true scaffold_2: 6555821-6568065 Theobroma cacao
Thecc1EG007348 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 6567066-6568065 Theobroma cacao
Thecc1EG007348 2.0kb upstream 2.0kb upstream 13245 true scaffold_2: 6553821-6567065 Theobroma cacao
Thecc1EG007348 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 6553821-6555820 Theobroma cacao
Thecc1EG007348 2.0kb downstream 2.0kb downstream 13245 true scaffold_2: 6555821-6569065 Theobroma cacao
Thecc1EG007348 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 6567066-6569065 Theobroma cacao
Thecc1EG007348 5.0kb upstream 5.0kb upstream 16245 true scaffold_2: 6550821-6567065 Theobroma cacao
Thecc1EG007348 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 6550821-6555820 Theobroma cacao
Thecc1EG007348 5.0kb downstream 5.0kb downstream 16245 true scaffold_2: 6555821-6572065 Theobroma cacao
Thecc1EG007348 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 6567066-6572065 Theobroma cacao
Thecc1EG007348 10.0kb upstream 10.0kb upstream 21245 true scaffold_2: 6545821-6567065 Theobroma cacao
Thecc1EG007348 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 6545821-6555820 Theobroma cacao
Thecc1EG007348 10.0kb downstream 10.0kb downstream 21245 true scaffold_2: 6555821-6577065 Theobroma cacao
Thecc1EG007348 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 6567066-6577065 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828012 5264 Brassicales-Malvales View MSA
124343113 5266 SBM View MSA
124237006 5268 Malvidae View MSA
124063122 5270 Rosid View MSA
123738991 5271 Pentapetalae View MSA
122791664 5272 Eudicot View MSA
122044147 5273 Angiosperm View MSA
121345604 5274 Embryophyte View MSA
123424668 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain