Gene : Thecc1EG007601 T. cacao v1.1
Defline:  (1 of 3) 1.1.1.34 - Hydroxymethylglutaryl-CoA reductase (NADPH) / HMG-CoA reductase Genomic Order:  1425
Name:  ? Thecc1EG007601 Secondary Identifier:  ? PAC:27462107
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5910 Theobroma cacao pathologic  
Tcacao PWY-922 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG007601 0.5kb upstream 0.5kb upstream 3624 true scaffold_2: 7851467-7855090 Theobroma cacao
Thecc1EG007601 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 7851467-7851966 Theobroma cacao
Thecc1EG007601 0.5kb downstream 0.5kb downstream 3624 true scaffold_2: 7851967-7855590 Theobroma cacao
Thecc1EG007601 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 7855091-7855590 Theobroma cacao
Thecc1EG007601 1.0kb upstream 1.0kb upstream 4124 true scaffold_2: 7850967-7855090 Theobroma cacao
Thecc1EG007601 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 7850967-7851966 Theobroma cacao
Thecc1EG007601 1.0kb downstream 1.0kb downstream 4124 true scaffold_2: 7851967-7856090 Theobroma cacao
Thecc1EG007601 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 7855091-7856090 Theobroma cacao
Thecc1EG007601 2.0kb upstream 2.0kb upstream 5124 true scaffold_2: 7849967-7855090 Theobroma cacao
Thecc1EG007601 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 7849967-7851966 Theobroma cacao
Thecc1EG007601 2.0kb downstream 2.0kb downstream 5124 true scaffold_2: 7851967-7857090 Theobroma cacao
Thecc1EG007601 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 7855091-7857090 Theobroma cacao
Thecc1EG007601 5.0kb upstream 5.0kb upstream 8124 true scaffold_2: 7846967-7855090 Theobroma cacao
Thecc1EG007601 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 7846967-7851966 Theobroma cacao
Thecc1EG007601 5.0kb downstream 5.0kb downstream 8124 true scaffold_2: 7851967-7860090 Theobroma cacao
Thecc1EG007601 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 7855091-7860090 Theobroma cacao
Thecc1EG007601 10.0kb upstream 10.0kb upstream 13124 true scaffold_2: 7841967-7855090 Theobroma cacao
Thecc1EG007601 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 7841967-7851966 Theobroma cacao
Thecc1EG007601 10.0kb downstream 10.0kb downstream 13124 true scaffold_2: 7851967-7865090 Theobroma cacao
Thecc1EG007601 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 7855091-7865090 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840329 5264 Brassicales-Malvales View MSA
124347727 5266 SBM View MSA
124239533 5268 Malvidae View MSA
124072826 5270 Rosid View MSA
123751436 5271 Pentapetalae View MSA
122791870 5272 Eudicot View MSA
122051392 5273 Angiosperm View MSA
121350752 5274 Embryophyte View MSA
123381875 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain