Gene : Thecc1EG007715 T. cacao v1.1
Defline:  (1 of 1) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  1522
Name:  ? Thecc1EG007715 Secondary Identifier:  ? PAC:27460793
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG007715 0.5kb upstream 0.5kb upstream 5665 true scaffold_2: 8517208-8522872 Theobroma cacao
Thecc1EG007715 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8522373-8522872 Theobroma cacao
Thecc1EG007715 0.5kb downstream 0.5kb downstream 5665 true scaffold_2: 8516708-8522372 Theobroma cacao
Thecc1EG007715 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8516708-8517207 Theobroma cacao
Thecc1EG007715 1.0kb upstream 1.0kb upstream 6165 true scaffold_2: 8517208-8523372 Theobroma cacao
Thecc1EG007715 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8522373-8523372 Theobroma cacao
Thecc1EG007715 1.0kb downstream 1.0kb downstream 6165 true scaffold_2: 8516208-8522372 Theobroma cacao
Thecc1EG007715 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8516208-8517207 Theobroma cacao
Thecc1EG007715 2.0kb upstream 2.0kb upstream 7165 true scaffold_2: 8517208-8524372 Theobroma cacao
Thecc1EG007715 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8522373-8524372 Theobroma cacao
Thecc1EG007715 2.0kb downstream 2.0kb downstream 7165 true scaffold_2: 8515208-8522372 Theobroma cacao
Thecc1EG007715 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8515208-8517207 Theobroma cacao
Thecc1EG007715 5.0kb upstream 5.0kb upstream 10165 true scaffold_2: 8517208-8527372 Theobroma cacao
Thecc1EG007715 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8522373-8527372 Theobroma cacao
Thecc1EG007715 5.0kb downstream 5.0kb downstream 10165 true scaffold_2: 8512208-8522372 Theobroma cacao
Thecc1EG007715 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8512208-8517207 Theobroma cacao
Thecc1EG007715 10.0kb upstream 10.0kb upstream 15165 true scaffold_2: 8517208-8532372 Theobroma cacao
Thecc1EG007715 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8522373-8532372 Theobroma cacao
Thecc1EG007715 10.0kb downstream 10.0kb downstream 15165 true scaffold_2: 8507208-8522372 Theobroma cacao
Thecc1EG007715 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8507208-8517207 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837758 5264 Brassicales-Malvales View MSA
124342253 5266 SBM View MSA
124250817 5268 Malvidae View MSA
124071271 5270 Rosid View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain